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LEF1-AS1 LEF1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 641518, updated on 24-Nov-2020

Summary

Official Symbol
LEF1-AS1provided by HGNC
Official Full Name
LEF1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40339
See related
Ensembl:ENSG00000232021
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LEF1NAT
Expression
Biased expression in testis (RPKM 7.7), lymph node (RPKM 1.6) and 6 other tissues See more

Genomic context

See LEF1-AS1 in Genome Data Viewer
Location:
4q25
Exon count:
4
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (108167525..108176430)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (109088681..109097586)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986298 Neighboring gene uncharacterized LOC107986299 Neighboring gene cytochrome P450 family 2 subfamily U member 1 Neighboring gene hydroxyacyl-CoA dehydrogenase Neighboring gene lymphoid enhancer binding factor 1 Neighboring gene uncharacterized LOC107986300 Neighboring gene VISTA enhancer hs1545

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • LEF1 antisense RNA 1 (non-protein coding)
  • LEF1 natural antisense transcript

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029373.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BC041819, BC067877
    Related
    ENST00000512637.6
  2. NR_029374.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' exon, compared to variant 1.
    Source sequence(s)
    BC020624, BC067877
    Related
    ENST00000436413.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    108167525..108176430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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