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TSC22D1-AS1 TSC22D1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 641467, updated on 9-Jun-2025
Official Symbol
TSC22D1-AS1provided by HGNC
Official Full Name
TSC22D1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43684
See related
Ensembl:ENSG00000278156 AllianceGenome:HGNC:43684
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00407
Expression
Broad expression in testis (RPKM 5.4), brain (RPKM 3.8) and 24 other tissues See more
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See TSC22D1-AS1 in Genome Data Viewer
Location:
13q14.11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (44575896..44580432)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (43795683..43800219)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (45150032..45154568)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:44991723-44992251 Neighboring gene tumor suppressor candidate 8 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:44999732-44999924 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:45008784-45009983 Neighboring gene uncharacterized LOC124903167 Neighboring gene TSC22 domain family member 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:45026151-45026652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:45026653-45027152 Neighboring gene NANOG hESC enhancer GRCh37_chr13:45090824-45091325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7674 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5306 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5308 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5309 Neighboring gene Sharpr-MPRA regulatory region 2103 Neighboring gene SMARCE1 pseudogene 5 Neighboring gene small nucleolar RNA U13

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Markers

Other Names

  • TSC22D1 antisense RNA 1 (non-protein coding)
  • long intergenic non-protein coding RNA 407

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038381.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356107, BC040675
    Related
    ENST00000616360.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    44575896..44580432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    43795683..43800219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)