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Pan pangolin [ Tribolium castaneum (red flour beetle) ]

Gene ID: 641465, updated on 12-Apr-2024

Summary

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Gene symbol
Pan
Gene description
pangolin
Locus tag
TcasGA2_TC003720
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 1 NC_087394.1 (21805261..21971246, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG3 NC_007418.3 (13675443..13843119)

Chromosome 1 - NC_087394.1Genomic Context describing neighboring genes Neighboring gene Dihydrouridine synthase 1 Neighboring gene zinc finger HIT domain-containing protein 1 Neighboring gene magu Neighboring gene uncharacterized LOC135265647 Neighboring gene uncharacterized LOC107397560 Neighboring gene uncharacterized LOC135265638 Neighboring gene cysteine-rich protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Anterior localization of maternal mRNAs in a short germ insect lacking bicoid. Bucher G, et al. Evol Dev, 2005 Mar-Apr. PMID 15733312

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of beta-catenin-TCF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pangolin
Names
AUGUSTUS-3.0.2_32496
GLEAN_03720
GLEAN_03726
GLEAN_03727
GLEAN_03728

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039401.1 → NP_001034490.1  pangolin

    See identical proteins and their annotated locations for NP_001034490.1

    Status: PROVISIONAL

    Source sequence(s)
    AY800247
    UniProtKB/TrEMBL
    Q5RT68, Q5RT69
    Conserved Domains (2) summary
    cd01388
    Location:478 → 549
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08347
    Location:1 → 200
    CTNNB1_binding; N-terminal CTNNB1 binding

RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087394.1 Reference icTriCast1.1 Primary Assembly

    Range
    21805261..21971246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008192930.3 → XP_008191152.1  pangolin isoform X4

    UniProtKB/TrEMBL
    Q5RT69
    Conserved Domains (2) summary
    cd01388
    Location:478 → 549
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08347
    Location:1 → 200
    CTNNB1_binding; N-terminal CTNNB1 binding

  2. XM_008192929.3 → XP_008191151.1  pangolin isoform X3

    Conserved Domains (2) summary
    cd01388
    Location:291 → 362
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08347
    Location:1 → 200
    CTNNB1_binding; N-terminal CTNNB1 binding

  3. XM_008192928.3 → XP_008191150.1  pangolin isoform X2

    Conserved Domains (2) summary
    cd01388
    Location:318 → 389
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08347
    Location:1 → 71
    CTNNB1_binding; N-terminal CTNNB1 binding

  4. XM_008192927.3 → XP_008191149.1  pangolin isoform X1

    Conserved Domains (2) summary
    cd01388
    Location:318 → 389
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08347
    Location:1 → 71
    CTNNB1_binding; N-terminal CTNNB1 binding
Nucleotide Protein Strain
Heading Accession and Version

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