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RTP4 receptor transporter protein 4 [ Homo sapiens (human) ]

Gene ID: 64108, updated on 13-Mar-2020

Summary

Official Symbol
RTP4provided by HGNC
Official Full Name
receptor transporter protein 4provided by HGNC
Primary source
HGNC:HGNC:23992
See related
Ensembl:ENSG00000136514 MIM:609350
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IFRG28; Z3CXXC4
Expression
Ubiquitous expression in urinary bladder (RPKM 8.4), duodenum (RPKM 6.0) and 25 other tissues See more
Orthologs

Genomic context

See RTP4 in Genome Data Viewer
Location:
3q27.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (187368385..187372076)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (187086168..187089372)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene mannan binding lectin serine peptidase 1 Neighboring gene MASP1 intron CAGE-defined mid-level expression enhancer Neighboring gene uncharacterized LOC101929130 Neighboring gene long intergenic non-protein coding RNA 2041 Neighboring gene uncharacterized LOC105374262

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
olfactory receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
defense response to virus IDA
Inferred from Direct Assay
more info
PubMed 
detection of chemical stimulus involved in sensory perception of bitter taste IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
detection of chemical stimulus involved in sensory perception of bitter taste IDA
Inferred from Direct Assay
more info
PubMed 
protein insertion into membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein targeting to membrane IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
receptor-transporting protein 4
Names
28 kDa interferon-responsive protein
28kD interferon responsive protein
3CxxC-type zinc finger protein 4
receptor (chemosensory) transporter protein 4
zinc finger, 3CxxC-type 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_022147.3NP_071430.2  receptor-transporting protein 4

    See identical proteins and their annotated locations for NP_071430.2

    Status: VALIDATED

    Source sequence(s)
    AC068299, BC013161, CA413859
    Consensus CDS
    CCDS33910.1
    UniProtKB/Swiss-Prot
    Q96DX8
    Related
    ENSP00000259030.2, ENST00000259030.3
    Conserved Domains (1) summary
    pfam13695
    Location:48160
    zf-3CxxC; Zinc-binding domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    187368385..187372076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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