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Ube4b ubiquitination factor E4B [ Mus musculus (house mouse) ]

Gene ID: 63958, updated on 23-Jun-2021

Summary

Official Symbol
Ube4bprovided by MGI
Official Full Name
ubiquitination factor E4Bprovided by MGI
Primary source
MGI:MGI:1927086
See related
Ensembl:ENSMUSG00000028960
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
UFD2; UFD2a; Ufd2p; AU014668; mKIAA0684; D4Bwg0973e; 4930551I19Rik; 4933406G05Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 14.6), cerebellum adult (RPKM 13.3) and 28 other tissues See more
Orthologs
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Genomic context

See Ube4b in Genome Data Viewer
Location:
4 E2; 4 79.08 cM
Exon count:
30
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (149412873..149512618, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (149328416..149428161, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (148702525..148800740, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene phosphogluconate dehydrogenase Neighboring gene kinesin family member 1B Neighboring gene ubiquitination factor E4B, opposite strand 3 Neighboring gene tRNA methyltransferase 11-2, pseudogene 2 Neighboring gene retinol binding protein 7, cellular Neighboring gene nicotinamide nucleotide adenylyltransferase 1 Neighboring gene transmembrame protein 274

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IDA
Inferred from Direct Assay
more info
PubMed 
enables ATPase binding ISO
Inferred from Sequence Orthology
more info
 
enables enzyme binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables ubiquitin protein ligase activity TAS
Traceable Author Statement
more info
PubMed 
enables ubiquitin-ubiquitin ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ubiquitin-ubiquitin ligase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables unfolded protein binding NAS
Non-traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular protein catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in granzyme-mediated apoptotic signaling pathway ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within neuron projection development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within proteasome-mediated ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
PubMed 
acts_upstream_of_or_within protein autoubiquitination IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein folding NAS
Non-traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within protein monoubiquitination IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein polyubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within protein polyubiquitination IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within protein polyubiquitination IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within protein ubiquitination IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to UV ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within response to endoplasmic reticulum stress IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in ubiquitin-dependent ERAD pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within ventricular trabecula myocardium morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
part_of ubiquitin ligase complex TAS
Traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
ubiquitin conjugation factor E4 B
Names
RING-type E3 ubiquitin transferase E4 B
ubiquitin fusion degradation protein 2
ubiquitination factor E4B, UFD2 homolog
NP_071305.2
XP_006539151.1
XP_036020183.1
XP_036020184.1
XP_036020185.1
XP_036020186.1
XP_036020187.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_022022.3NP_071305.2  ubiquitin conjugation factor E4 B

    See identical proteins and their annotated locations for NP_071305.2

    Status: VALIDATED

    Source sequence(s)
    AK016689, BC075620, BY279585
    Consensus CDS
    CCDS18958.1
    UniProtKB/Swiss-Prot
    Q9ES00
    UniProtKB/TrEMBL
    Q3V426
    Related
    ENSMUSP00000099501.4, ENSMUST00000103212.10
    Conserved Domains (2) summary
    pfam04564
    Location:10991169
    U-box; U-box domain
    pfam10408
    Location:4621082
    Ufd2P_core; Ubiquitin elongating factor core

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    149412873..149512618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036164293.1XP_036020186.1  ubiquitin conjugation factor E4 B isoform X5

    Conserved Domains (2) summary
    cd16658
    Location:10951153
    RING-Ubox_UBE4B; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 B (UBE4B) and similar proteins
    pfam10408
    Location:4621082
    Ufd2P_core; Ubiquitin elongating factor core
  2. XM_006539088.4XP_006539151.1  ubiquitin conjugation factor E4 B isoform X4

    Conserved Domains (3) summary
    PHA03307
    Location:275522
    PHA03307; transcriptional regulator ICP4; Provisional
    cd16658
    Location:13411415
    RING-Ubox_UBE4B; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 B (UBE4B) and similar proteins
    pfam10408
    Location:7081328
    Ufd2P_core; Ubiquitin elongating factor core
  3. XM_036164292.1XP_036020185.1  ubiquitin conjugation factor E4 B isoform X3

    Conserved Domains (3) summary
    PHA03307
    Location:275522
    PHA03307; transcriptional regulator ICP4; Provisional
    cd16658
    Location:13411399
    RING-Ubox_UBE4B; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 B (UBE4B) and similar proteins
    pfam10408
    Location:7081328
    Ufd2P_core; Ubiquitin elongating factor core
  4. XM_036164290.1XP_036020183.1  ubiquitin conjugation factor E4 B isoform X1

    Conserved Domains (3) summary
    PHA03247
    Location:296521
    PHA03247; large tegument protein UL36; Provisional
    cd16658
    Location:13871461
    RING-Ubox_UBE4B; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 B (UBE4B) and similar proteins
    pfam10408
    Location:7541374
    Ufd2P_core; Ubiquitin elongating factor core
  5. XM_036164291.1XP_036020184.1  ubiquitin conjugation factor E4 B isoform X2

    Related
    ENSMUSP00000158872.2, ENSMUST00000239095.2
    Conserved Domains (3) summary
    PHA03247
    Location:289514
    PHA03247; large tegument protein UL36; Provisional
    cd16658
    Location:13801454
    RING-Ubox_UBE4B; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 B (UBE4B) and similar proteins
    pfam10408
    Location:7471367
    Ufd2P_core; Ubiquitin elongating factor core
  6. XM_036164294.1XP_036020187.1  ubiquitin conjugation factor E4 B isoform X6

    Conserved Domains (2) summary
    cd16658
    Location:898956
    RING-Ubox_UBE4B; U-box domain, a modified RING finger, found in ubiquitin conjugation factor E4 B (UBE4B) and similar proteins
    pfam10408
    Location:265885
    Ufd2P_core; Ubiquitin elongating factor core
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