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Susd1 sushi domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 634731, updated on 26-Sep-2022

Summary

Official Symbol
Susd1provided by MGI
Official Full Name
sushi domain containing 1provided by MGI
Primary source
MGI:MGI:3651543
See related
Ensembl:ENSMUSG00000038578 AllianceGenome:MGI:3651543
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm12528; A530080P10
Summary
Orthologous to human SUSD1 (sushi domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in placenta adult (RPKM 9.1), liver E14.5 (RPKM 6.5) and 23 other tissues See more
Orthologs
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Genomic context

See Susd1 in Genome Data Viewer
Location:
4; 4 B3
Exon count:
18
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (59314202..59438738, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (59314202..59439869, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 12596 Neighboring gene predicted gene, 35578 Neighboring gene zinc finger, MYND domain containing 19 pseudogene Neighboring gene polypyrimidine tract binding protein 3 Neighboring gene hydroxysteroid dehydrogenase like 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (3) 

General gene information

Markers

Homology

Clone Names

  • FLJ32142

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
sushi domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163288.2NP_001156760.2  sushi domain-containing protein 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AK041075, AK084362, AL808112, AL824704, BY721012
    Consensus CDS
    CCDS51184.1
    UniProtKB/TrEMBL
    E9Q3H4
    Related
    ENSMUSP00000048201.7, ENSMUST00000040166.14
    Conserved Domains (3) summary
    cd00033
    Location:184240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:4774
    EGF_3; EGF domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    59314202..59438738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036164287.1XP_036020180.1  sushi domain-containing protein 1 isoform X4

    Conserved Domains (3) summary
    cd00033
    Location:94150
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:4071
    EGF_CA; Calcium-binding EGF-like domain
    pfam18861
    Location:526657
    PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J
  2. XM_006538143.5XP_006538206.1  sushi domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    cd00033
    Location:146202
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:92123
    EGF_CA; Calcium-binding EGF-like domain
  3. XM_006538141.5XP_006538204.1  sushi domain-containing protein 1 isoform X1

    Conserved Domains (3) summary
    cd00033
    Location:184240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:4774
    EGF_3; EGF domain
  4. XM_006538142.5XP_006538205.1  sushi domain-containing protein 1 isoform X2

    Conserved Domains (3) summary
    cd00033
    Location:184240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:4774
    EGF_3; EGF domain
  5. XM_036164288.1XP_036020181.1  sushi domain-containing protein 1 isoform X7

    Conserved Domains (2) summary
    cd00033
    Location:2783
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    pfam18861
    Location:459590
    PTP_tm; Transmembrane domain of protein tyrosine phosphatase, receptor type J
  6. XM_006538144.5XP_006538207.1  sushi domain-containing protein 1 isoform X5

    Conserved Domains (3) summary
    cd00033
    Location:184240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:4774
    EGF_3; EGF domain
  7. XM_006538146.5XP_006538209.1  sushi domain-containing protein 1 isoform X8

    Conserved Domains (3) summary
    cd00033
    Location:184240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:4774
    EGF_3; EGF domain
  8. XM_006538145.5XP_006538208.1  sushi domain-containing protein 1 isoform X6

    Conserved Domains (3) summary
    cd00033
    Location:184240
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00179
    Location:130161
    EGF_CA; Calcium-binding EGF-like domain
    pfam12947
    Location:4774
    EGF_3; EGF domain

RNA

  1. XR_001784175.3 RNA Sequence

  2. XR_003954993.2 RNA Sequence

  3. XR_390338.5 RNA Sequence