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Marchf10 membrane associated ring-CH-type finger 10 [ Mus musculus (house mouse) ]

Gene ID: 632687, updated on 26-Sep-2022

Summary

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Official Symbol
Marchf10provided by MGI
Official Full Name
membrane associated ring-CH-type finger 10provided by MGI
Primary source
MGI:MGI:2443469
See related
Ensembl:ENSMUSG00000078627 AllianceGenome:MGI:2443469
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rnf190; March10; 4933417C16Rik
Summary
Orthologous to human MARCHF10 (membrane associated ring-CH-type finger 10). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 88.2) See more
Orthologs
human all
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Genomic context

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See Marchf10 in Genome Data Viewer
Location:
11; 11 E1
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (105251624..105348527, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (105360798..105457701, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53649 Neighboring gene mannose receptor, C type 2 Neighboring gene uncharacterized LOC115487808 Neighboring gene predicted gene, 39417 Neighboring gene predicted gene, 35828 Neighboring gene predicted gene, 39422

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC118297

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
probable E3 ubiquitin-protein ligase MARCHF10
Names
membrane-associated ring finger (C3HC4) 10
ring finger protein 190
NP_001034331.1
NP_766156.2
XP_006533967.1
XP_006533968.1
XP_030102075.1
XP_030102076.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039242.2 → NP_001034331.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform 2

    See identical proteins and their annotated locations for NP_001034331.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains a different segment in its terminal exon and lacks several 3' exons, compared to variant 1. The resulting protein (isoform 2) has a distinct and shorter C-terminus when it is compared to isoform 1.
    Source sequence(s)
    AK132734, BY099161
    Consensus CDS
    CCDS25540.1
    UniProtKB/TrEMBL
    Q497L7
    Related
    ENSMUSP00000097906.4, ENSMUST00000100332.4

  2. NM_172568.2 → NP_766156.2  probable E3 ubiquitin-protein ligase MARCHF10 isoform 1

    See identical proteins and their annotated locations for NP_766156.2

    Status: VALIDATED

    Description
    Transcript Variant: This transcript (1) encodes the longer protein (isoform 1).
    Source sequence(s)
    AK132734, AL645684, BY099161
    Consensus CDS
    CCDS48955.1
    UniProtKB/TrEMBL
    E9PX79, Q497L7
    Related
    ENSMUSP00000063198.4, ENSMUST00000049995.10
    Conserved Domains (1) summary
    cd16813
    Location:639 → 698
    RING_CH-C4HC3_MARCH10; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH10 (MARCH10)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    105251624..105348527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533905.4 → XP_006533968.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform X1

    See identical proteins and their annotated locations for XP_006533968.1

    UniProtKB/TrEMBL
    E9PX79
    Conserved Domains (1) summary
    cd16813
    Location:639 → 698
    RING_CH-C4HC3_MARCH10; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH10 (MARCH10)

  2. XM_006533904.1 → XP_006533967.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform X1

    See identical proteins and their annotated locations for XP_006533967.1

    UniProtKB/TrEMBL
    E9PX79
    Related
    ENSMUSP00000121919.2, ENSMUST00000138977.8
    Conserved Domains (1) summary
    cd16813
    Location:639 → 698
    RING_CH-C4HC3_MARCH10; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH10 (MARCH10)

  3. XM_030246216.1 → XP_030102076.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform X2

    UniProtKB/TrEMBL
    Q497L7

  4. XM_030246215.1 → XP_030102075.1  probable E3 ubiquitin-protein ligase MARCHF10 isoform X2

    UniProtKB/TrEMBL
    Q497L7
Nucleotide Protein Strain
Heading Accession and Version

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