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Gm12250 predicted gene 12250 [ Mus musculus (house mouse) ]

Gene ID: 631323, updated on 8-Feb-2024

Summary

Official Symbol
Gm12250provided by MGI
Official Full Name
predicted gene 12250provided by MGI
Primary source
MGI:MGI:3649299
See related
AllianceGenome:MGI:3649299
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Irgb10
Expression
Broad expression in large intestine adult (RPKM 2.7), spleen adult (RPKM 1.5) and 20 other tissues See more
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Genomic context

See Gm12250 in Genome Data Viewer
Location:
11 B1.3; 11 35.96 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (58074669..58081024)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (58183843..58190198)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene gem nuclear organelle associated protein 5 Neighboring gene STARR-positive B cell enhancer ABC_E5229 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene STARR-positive B cell enhancer ABC_E8877 Neighboring gene interferon gamma induced GTPase Neighboring gene STARR-positive B cell enhancer ABC_E8408 Neighboring gene immunity-related GTPase family M member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

General protein information

Preferred Names
interferon-gamma-inducible GTPase 10
Names
interferon-gamma-inducible p47 GTPase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135115.1NP_001128587.1  interferon-gamma-inducible GTPase 10

    See identical proteins and their annotated locations for NP_001128587.1

    Status: PROVISIONAL

    Source sequence(s)
    AL928857
    UniProtKB/Swiss-Prot
    Q0GUM2, Q0GUM3
    UniProtKB/TrEMBL
    U5NFV2
    Conserved Domains (2) summary
    cd04104
    Location:68263
    p47_IIGP_like; p47 GTPase family includes IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1
    pfam05049
    Location:34407
    IIGP; Interferon-inducible GTPase (IIGP)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    58074669..58081024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)