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SAA3P serum amyloid A3, pseudogene [ Homo sapiens (human) ]

Gene ID: 6290, updated on 25-Oct-2022

Summary

Official Symbol
SAA3Pprovided by HGNC
Official Full Name
serum amyloid A3, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:10515
See related
Ensembl:ENSG00000290741 AllianceGenome:HGNC:10515
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SAA3
Summary
Predicted to enable Toll-like receptor 4 binding activity and chemoattractant activity. Predicted to act upstream of or within several processes, including I-kappaB phosphorylation; cellular response to interleukin-1; and response to stilbenoid. Predicted to be located in extracellular space. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See SAA3P in Genome Data Viewer
Location:
11p15.1
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (18112472..18116132, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (18208017..18211675, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (18134019..18137679, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene serum amyloid A like 1 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 5 Neighboring gene MAS related GPR family member X3 Neighboring gene MAS related GPR family member X12, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026576.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090099
    Related
    ENST00000534768.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    18112472..18116132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    18208017..18211675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002634.3: Suppressed sequence

    Description
    NG_002634.3: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.