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Cldn34-ps claudin 34, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 628893, updated on 27-Nov-2024

Summary

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Official Symbol
Cldn34-psprovided by MGI
Official Full Name
claudin 34, pseudogeneprovided by MGI
Primary source
MGI:MGI:3645962
See related
Ensembl:ENSMUSG00000087152 Ensembl:ENSMUSG00000133207 AllianceGenome:MGI:3645962
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm6927; EG628893
Summary
Orthologous to human CLDN34 (claudin 34). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 1.3) See more
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Genomic context

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See Cldn34-ps in Genome Data Viewer
Location:
X B; X 38.31 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (76718275..76734904, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (77674669..77691298, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 5937 Neighboring gene STARR-seq mESC enhancer starr_47413 Neighboring gene transducin (beta)-like 1 X-linked Neighboring gene STARR-seq mESC enhancer starr_47415 Neighboring gene predicted gene, 52447 Neighboring gene STARR-seq mESC enhancer starr_47416 Neighboring gene SET translocation pseudogene Neighboring gene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC628893
Names
predicted pseudogene 6927

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101585.1 → NP_001095055.1  uncharacterized protein LOC628893

    See identical proteins and their annotated locations for NP_001095055.1

    Status: PREDICTED

    Source sequence(s)
    CH466576
    Related
    ENSMUST00000145498.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    76718275..76734904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528229.1 → XP_006528292.1  uncharacterized protein LOC628893 isoform X1

    See identical proteins and their annotated locations for XP_006528292.1

    Related
    ENSMUST00000316587.1

  2. XM_017318591.1 → XP_017174080.1  uncharacterized protein LOC628893 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials