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Eddm13 epididymal protein 13 [ Mus musculus (house mouse) ]

Gene ID: 627821, updated on 5-Mar-2024

Summary

Official Symbol
Eddm13provided by MGI
Official Full Name
epididymal protein 13provided by MGI
Primary source
MGI:MGI:3643580
See related
Ensembl:ENSMUSG00000053367 AllianceGenome:MGI:3643580
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Epp13; Gm6792; EG627821
Summary
Predicted to be located in extracellular region. Orthologous to human EDDM13 (epididymal protein 13). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward genital fat pad adult (RPKM 422.1) See more
Orthologs
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Genomic context

See Eddm13 in Genome Data Viewer
Location:
7 A1; 7 3.62 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (6255636..6284860)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (6252637..6281861)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_17966 Neighboring gene galanin-like peptide Neighboring gene zinc finger and SCAN domain containing 5B Neighboring gene STARR-seq mESC enhancer starr_17972 Neighboring gene STARR-positive B cell enhancer ABC_E11341 Neighboring gene STARR-seq mESC enhancer starr_17975 Neighboring gene STARR-positive B cell enhancer ABC_E4894 Neighboring gene zinc finger protein 667 Neighboring gene zinc finger protein 583

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
epididymal protein 13
Names
epididymis-specific protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177416.1NP_001170887.1  epididymal protein 13 isoform 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC148989, AK079003, BX635876
    Consensus CDS
    CCDS51989.1
    UniProtKB/Swiss-Prot
    E9Q7F5
    Related
    ENSMUSP00000113155.2, ENSMUST00000121024.8
  2. NM_001177417.1NP_001170888.1  epididymal protein 13 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) contains an alternate 5' terminal exon compared to variant 1, resulting in translation initiation from an in-frame downstream AUG, and an isoform (2) with a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AC148989, AK079003, BX635876
    UniProtKB/TrEMBL
    Q8C5A6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    6255636..6284860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250665.2XP_011248967.1  epididymal protein 13 isoform X1

  2. XM_011250666.2XP_011248968.1  epididymal protein 13 isoform X2

  3. XM_036153319.1XP_036009212.1  epididymal protein 13 isoform X3

  4. XM_006540265.3XP_006540328.1  epididymal protein 13 isoform X4

  5. XM_011250667.3XP_011248969.1  epididymal protein 13 isoform X5

  6. XM_036153320.1XP_036009213.1  epididymal protein 13 isoform X6