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Gm6729 predicted gene 6729 [ Mus musculus (house mouse) ]

Gene ID: 627035, updated on 27-Nov-2024

Summary

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Official Symbol
Gm6729provided by MGI
Official Full Name
predicted gene 6729provided by MGI
Primary source
MGI:MGI:3646339
See related
AllianceGenome:MGI:3646339
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG627035
Expression
Restricted expression toward testis adult (RPKM 15.2) See more
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Genomic context

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See Gm6729 in Genome Data Viewer
Location:
10 C1; 10 42.9 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (86362161..86377447, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (86526297..86541584, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene synapsin III Neighboring gene STARR-seq mESC enhancer starr_27458 Neighboring gene predicted gene, 35636 Neighboring gene STARR-seq mESC enhancer starr_27459 Neighboring gene VISTA enhancer mm52 Neighboring gene predicted gene, 57766 Neighboring gene tissue inhibitor of metalloproteinase 3 Neighboring gene STARR-seq mESC enhancer starr_27465 Neighboring gene predicted gene, 21027 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC627035

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001384224.1 → NP_001371153.1  uncharacterized protein LOC627035

    Status: VALIDATED

    Source sequence(s)
    AC132384
    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

RNA

  1. NR_169119.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC132384

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    86362161..86377447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006514381.5 → XP_006514444.1  uncharacterized protein LOC627035 isoform X1

    See identical proteins and their annotated locations for XP_006514444.1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  2. XM_006514376.5 → XP_006514439.1  uncharacterized protein LOC627035 isoform X1

    See identical proteins and their annotated locations for XP_006514439.1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  3. XM_006514379.5 → XP_006514442.1  uncharacterized protein LOC627035 isoform X1

    See identical proteins and their annotated locations for XP_006514442.1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  4. XM_006514373.5 → XP_006514436.1  uncharacterized protein LOC627035 isoform X1

    See identical proteins and their annotated locations for XP_006514436.1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  5. XM_017314186.3 → XP_017169675.1  uncharacterized protein LOC627035 isoform X1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  6. XM_006514377.5 → XP_006514440.1  uncharacterized protein LOC627035 isoform X1

    See identical proteins and their annotated locations for XP_006514440.1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  7. XM_006514380.5 → XP_006514443.1  uncharacterized protein LOC627035 isoform X1

    See identical proteins and their annotated locations for XP_006514443.1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  8. XM_006514378.5 → XP_006514441.1  uncharacterized protein LOC627035 isoform X1

    See identical proteins and their annotated locations for XP_006514441.1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  9. XM_011243630.4 → XP_011241932.1  uncharacterized protein LOC627035 isoform X1

    See identical proteins and their annotated locations for XP_011241932.1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  10. XM_017314185.3 → XP_017169674.1  uncharacterized protein LOC627035 isoform X1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases

  11. XM_006514374.5 → XP_006514437.1  uncharacterized protein LOC627035 isoform X1

    See identical proteins and their annotated locations for XP_006514437.1

    Conserved Domains (2) summary
    cd14337
    Location:275 → 314
    UBA_MARK_Par1; UBA domain found in microtubule-associated protein (MAP)/microtubule affinity-regulating kinase (MARK)/ partitioning-defective 1 (Par-1) and similar proteins
    cd14003
    Location:13 → 261
    STKc_AMPK-like; Catalytic domain of AMP-activated protein kinase-like Serine/Threonine Kinases
Nucleotide Protein
Heading Accession and Version

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