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Ccdc121rt3 coiled-coil domain containing 121, retrogene 3 [ Mus musculus (house mouse) ]

Gene ID: 625424, updated on 6-Jul-2026
Official Symbol
Ccdc121rt3provided by MGI
Official Full Name
coiled-coil domain containing 121, retrogene 3provided by MGI
Primary source
MGI:MGI:3648511
See related
Ensembl:ENSMUSG00000051503 AllianceGenome:MGI:3648511
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm6583; EG625424
Summary
Orthologous to human CCDC121 (coiled-coil domain containing 121). [provided by Alliance of Genome Resources, Jul 2025]
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See Ccdc121rt3 in Genome Data Viewer
Location:
5 F; 5 54.69 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (112501639..112503899, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (112353773..112356033, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:112714594-112714795 Neighboring gene STARR-positive B cell enhancer ABC_E3600 Neighboring gene protein-tyrosine sulfotransferase 2 Neighboring gene tuftelin interacting protein 11 Neighboring gene SRR1 domain containing Neighboring gene HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 Neighboring gene predicted gene 20636 Neighboring gene aspartate beta-hydroxylase domain containing 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
Preferred Names
uncharacterized protein LOC625424

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039228.4 → NP_001034317.2  uncharacterized protein LOC625424

    Status: VALIDATED

    Source sequence(s)
    AC123848, AK030210, BB018144
    Consensus CDS
    CCDS51615.1
    UniProtKB/TrEMBL
    B9EKK2, E9Q8Z1, Q8CDD5
    Related
    ENSMUSP00000049839.3, ENSMUST00000051117.3
    Conserved Domains (1) summary
    pfam14988
    Location:199 → 404
    DUF4515; Domain of unknown function (DUF4515)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    112501639..112503899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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