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Ift70a2 intraflagellar transport 70A2 [ Mus musculus (house mouse) ]

Gene ID: 620631, updated on 30-Apr-2024

Summary

Official Symbol
Ift70a2provided by MGI
Official Full Name
intraflagellar transport 70A2provided by MGI
Primary source
MGI:MGI:3700200
See related
Ensembl:ENSMUSG00000075272 AllianceGenome:MGI:3700200
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ttc30a2
Summary
Predicted to enable intraciliary transport particle B binding activity. Predicted to be involved in intraciliary transport. Predicted to act upstream of or within cell projection organization. Part of intraciliary transport particle B. Is expressed in several structures, including adrenal gland; aorta; brain; gut; and male reproductive gland or organ. Orthologous to several human genes including TTC30B (tetratricopeptide repeat domain 30B). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See Ift70a2 in Genome Data Viewer
Location:
2 C3; 2 44.8 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (75806516..75808523, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (75976172..75978179, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 70B Neighboring gene predicted gene, 54164 Neighboring gene STARR-positive B cell enhancer ABC_E5936 Neighboring gene STARR-seq mESC enhancer starr_04882 Neighboring gene STARR-seq mESC enhancer starr_04883 Neighboring gene intraflagellar transport 70A1 Neighboring gene phosphodiesterase 11A Neighboring gene predicted gene, 52518

Genomic regions, transcripts, and products

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables intraciliary transport particle B binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell projection organization IEA
Inferred from Electronic Annotation
more info
 
involved_in intraciliary transport IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within intraciliary transport IC
Inferred by Curator
more info
PubMed 
Component Evidence Code Pubs
is_active_in axonemal microtubule IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 
part_of intraciliary transport particle B IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of intraciliary transport particle B IDA
Inferred from Direct Assay
more info
PubMed 
part_of intraciliary transport particle B ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
intraflagellar transport protein 70A2
Names
TPR repeat protein 30A2
novel tetratrico peptide repeat (TPR) containing protein
tetratricopeptide repeat domain 30A2
tetratricopeptide repeat protein 30A2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081228.1NP_001074697.1  intraflagellar transport protein 70A2

    See identical proteins and their annotated locations for NP_001074697.1

    Status: PROVISIONAL

    Source sequence(s)
    AL772341
    Consensus CDS
    CCDS38151.1
    UniProtKB/Swiss-Prot
    A2AKQ8, B2RXQ0
    Related
    ENSMUSP00000097575.4, ENSMUST00000099995.5
    Conserved Domains (2) summary
    sd00006
    Location:4474
    TPR; TPR repeat [structural motif]
    pfam14559
    Location:2187
    TPR_19; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    75806516..75808523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)