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Vcf1 VCP nuclear cofactor family member 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 619573, updated on 5-Jul-2025
Official Symbol
Vcf1provided by RGD
Official Full Name
VCP nuclear cofactor family member 1provided by RGD
Primary source
RGD:1563409
See related
Ensembl:ENSRNOG00000002851 AllianceGenome:RGD:1563409
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam104a
Summary
Orthologous to human VCF1 (VCP nuclear cofactor family member 1). [provided by Alliance of Genome Resources, Jul 2025]
Expression
Biased expression in Testes (RPKM 206.5), Heart (RPKM 143.2) and 9 other tissues See more
Orthologs
human mouse all
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See Vcf1 in Genome Data Viewer
Location:
10q32.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (99206549..99227471, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (98707404..98728486, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (102179478..102200488, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 39, member 11 Neighboring gene transfer RNA alanine (anticodon UGC) 10 Neighboring gene somatostatin receptor 2 Neighboring gene component of oligomeric golgi complex 1 Neighboring gene mitochondrial nucleoid associated protein 1 Neighboring gene cleavage and polyadenylation specific factor 4-like

Go to nucleotide: Graphics FASTA GenBank

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Preferred Names
protein VCF1
Names
family with sequence similarity 104, member A

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034958.2 → NP_001030130.2  protein VCF1

    See identical proteins and their annotated locations for NP_001030130.2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A6HKG5, G3V6D5
    Related
    ENSRNOP00000004001.4, ENSRNOT00000004001.8
    Conserved Domains (1) summary
    pfam15434
    Location:79 → 183
    FAM104; Family 104

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    99206549..99227471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006247695.5 → XP_006247757.1  protein VCF1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2KAE7
    Related
    ENSRNOP00000075371.1, ENSRNOT00000081519.3
    Conserved Domains (1) summary
    pfam15434
    Location:79 → 203
    FAM104; Family 104

  2. XM_039086767.2 → XP_038942695.1  protein VCF1 isoform X5

    Conserved Domains (1) summary
    pfam15434
    Location:79 → 108
    FAM104; Family 104

  3. XM_039086768.2 → XP_038942696.1  protein VCF1 isoform X6

    UniProtKB/TrEMBL
    A6HKG6
    Conserved Domains (1) summary
    pfam15434
    Location:73 → 182
    FAM104; Family 104

  4. XM_039086771.2 → XP_038942699.1  protein VCF1 isoform X9

    Conserved Domains (1) summary
    pfam15434
    Location:41 → 149
    FAM104; Family 104

  5. XM_039086764.2 → XP_038942692.1  protein VCF1 isoform X3

    Conserved Domains (1) summary
    pfam15434
    Location:73 → 202
    FAM104; Family 104

  6. XM_006247697.4 → XP_006247759.1  protein VCF1 isoform X7

    Conserved Domains (1) summary
    pfam15434
    Location:45 → 169
    FAM104; Family 104

  7. XM_039086765.2 → XP_038942693.1  protein VCF1 isoform X2

    Conserved Domains (1) summary
    pfam15434
    Location:79 → 108
    FAM104; Family 104

  8. XM_039086770.2 → XP_038942698.1  protein VCF1 isoform X8

    Conserved Domains (1) summary
    pfam15434
    Location:41 → 74
    FAM104; Family 104

  9. XM_039086766.2 → XP_038942694.1  protein VCF1 isoform X4

    Conserved Domains (1) summary
    pfam15434
    Location:73 → 107
    FAM104; Family 104

  10. XM_063269793.1 → XP_063125863.1  protein VCF1 isoform X10

  11. XM_063269794.1 → XP_063125864.1  protein VCF1 isoform X11

Nucleotide Protein Strain
Heading Accession and Version

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