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Stxbp3-ps syntaxin-binding protein 3, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 619371, updated on 17-Aug-2024

Summary

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Official Symbol
Stxbp3-psprovided by MGI
Official Full Name
syntaxin-binding protein 3, pseudogeneprovided by MGI
Primary source
MGI:MGI:3586869
See related
AllianceGenome:MGI:3586869
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Stxbp3b; Stxbp3-1; Munc18c(L)
Expression
Ubiquitous expression in placenta adult (RPKM 4.3), bladder adult (RPKM 3.7) and 25 other tissues See more
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Genomic context

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See Stxbp3-ps in Genome Data Viewer
Location:
19 A; 19 6.1 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (9534970..9536612, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (9557606..9559248, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene proliferating cell nuclear antigen pseudogene 2 Neighboring gene predicted gene 9750 Neighboring gene STARR-seq mESC enhancer starr_45520 Neighboring gene STARR-seq mESC enhancer starr_45521 Neighboring gene STARR-seq mESC enhancer starr_45522 Neighboring gene STARR-seq mESC enhancer starr_45523 Neighboring gene STARR-seq mESC enhancer starr_45524 Neighboring gene STARR-seq mESC enhancer starr_45526 Neighboring gene STARR-seq mESC enhancer starr_45527 Neighboring gene STARR-seq mESC enhancer starr_45528 Neighboring gene STARR-seq mESC enhancer starr_45529 Neighboring gene STARR-seq mESC enhancer starr_45530 Neighboring gene STARR-seq mESC enhancer starr_45531 Neighboring gene secretoglobin, family 2A, member 2 Neighboring gene inner centromere protein Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of Munc18c(L), a novel murine Munc18c gene paralog. Schlaepfer IR, et al. Biochem Biophys Res Commun, 2005 Sep 2. PMID 16036223
  2. Exocytosis mechanisms underlying insulin release and glucose uptake: conserved roles for Munc18c and syntaxin 4. Jewell JL, et al. Am J Physiol Regul Integr Comp Physiol, 2010 Mar. PMID 20053958, Free PMC Article
  3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • syntaxin-binding protein 3-1
  • syntaxin-binding protein 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_073559.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC124701

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    9534970..9536612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_017130.1: Suppressed sequence

    Description
    NG_017130.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

  2. NM_001030317.2: Suppressed sequence

    Description
    NM_001030317.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein Strain
Heading Accession and Version

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