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SCART1 scavenger receptor family member expressed on T cells 1 [ Homo sapiens (human) ]

Gene ID: 619207, updated on 23-Sep-2021

Summary

Official Symbol
SCART1provided by HGNC
Official Full Name
scavenger receptor family member expressed on T cells 1provided by HGNC
Primary source
HGNC:HGNC:32411
See related
Ensembl:ENSG00000214279
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in spleen (RPKM 1.2), endometrium (RPKM 0.8) and 24 other tissues See more
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Genomic context

See SCART1 in Genome Data Viewer
Location:
10q26.3
Exon count:
13
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (133453928..133469183)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (135267432..135282687)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosome associated GTPase 1 Neighboring gene shadow of prion protein Neighboring gene olfactory receptor family 6 subfamily L member 2 pseudogene Neighboring gene uncharacterized LOC105378576 Neighboring gene olfactory receptor family 7 subfamily M member 1 pseudogene Neighboring gene uncharacterized LOC105378575

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in T cell mediated immunity NAS
Non-traceable Author Statement
more info
PubMed 
involved_in biological_process ND
No biological Data available
more info
 
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in brush border IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
scavenger receptor cysteine-rich domain-containing protein SCART1
Names
CD163c-alpha
scavenger receptor protein family member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396050.1NP_001382979.1  scavenger receptor cysteine-rich domain-containing protein SCART1 precursor

    Status: VALIDATED

    Source sequence(s)
    AL161645

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    133453928..133469183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033584.1: Suppressed sequence

    Description
    NM_001033584.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
  2. NR_002934.3: Suppressed sequence

    Description
    NR_002934.3: This RefSeq was removed because currently there is insufficient support for the transcript structure.
  3. NR_149718.1: Suppressed sequence

    Description
    NR_149718.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
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