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GPT2 glutamic--pyruvic transaminase 2 [ Bos taurus (domestic cattle) ]

Gene ID: 618400, updated on 30-Jan-2025
Official Symbol
GPT2provided by VGNC
Official Full Name
glutamic--pyruvic transaminase 2provided by VGNC
Primary source
VGNC:VGNC:29617
See related
BGD:BT15097; EnsemblRapid:ENSBTAG00070027715
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See GPT2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (15316320..15351062)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA11 Neighboring gene branched-chain-amino-acid aminotransferase, mitochondrial-like Neighboring gene uncharacterized LOC132342796 Neighboring gene DnaJ heat shock protein family (Hsp40) member A2

Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-alanine:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
alanine aminotransferase 2
NP_001180116.2
XP_005218795.1
XP_024834335.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193187.3 → NP_001180116.2  alanine aminotransferase 2

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000018
    UniProtKB/TrEMBL
    A0AAA9T2D7, A0AAA9TCH2
    Related
    ENSBTAP00070037852.1, ENSBTAT00070063093.1
    Conserved Domains (1) summary
    cl27741
    Location:48 → 523
    Aminotran_1_2; Aminotransferase class I and II

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    15316320..15351062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005218738.5 → XP_005218795.1  alanine aminotransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_005218795.1

    UniProtKB/TrEMBL
    A0AAA9T2D7, A0AAA9TCH2
    Related
    ENSBTAP00070037819.1, ENSBTAT00070063049.1
    Conserved Domains (1) summary
    cl27741
    Location:48 → 523
    Aminotran_1_2; Aminotransferase class I and II

  2. XM_024978567.2 → XP_024834335.1  alanine aminotransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0AAA9T2D7
    Conserved Domains (1) summary
    cl27741
    Location:1 → 423
    Aminotran_1_2; Aminotransferase class I and II
Nucleotide Protein Strain
Heading Accession and Version

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