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LIMD1 LIM domain containing 1 [ Bos taurus (domestic cattle) ]

Gene ID: 617525, updated on 30-Jan-2025
Official Symbol
LIMD1provided by VGNC
Official Full Name
LIM domain containing 1provided by VGNC
Primary source
VGNC:VGNC:30888
See related
BGD:BT11038; EnsemblRapid:ENSBTAG00070026124
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
all
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See LIMD1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (53629447..53708510, complement)

Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene SAC1 like phosphatidylinositide phosphatase Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene leucyl-tRNA synthetase 2, mitochondrial Neighboring gene uncharacterized LOC101907967

Genomic Sequence:
NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Bovine Genome Sequencing and Analysis Consortium, et al. Science, 2009 Apr 24. PMID 19390049, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of hippo signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of miRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hypoxia IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
LIM domain-containing protein 1
Names
LIM domains containing 1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193163.1 → NP_001180092.1  LIM domain-containing protein 1

    See identical proteins and their annotated locations for NP_001180092.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000022
    UniProtKB/Swiss-Prot
    G5E5X0
    Related
    ENSBTAP00070035082.1, ENSBTAT00070059150.1
    Conserved Domains (4) summary
    cd09352
    Location:470 → 523
    LIM1_Ajuba_like; The first LIM domain of Ajuba-like proteins
    cd09355
    Location:535 → 587
    LIM2_Ajuba_like; The second LIM domain of Ajuba-like proteins
    cd09438
    Location:595 → 656
    LIM3_Ajuba_like; The third LIM domain of Ajuba-like proteins
    PHA03247
    Location:72 → 462
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    53629447..53708510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059879879.1 → XP_059735862.1  LIM domain-containing protein 1 isoform X1

  2. XM_059879880.1 → XP_059735863.1  LIM domain-containing protein 1 isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
G5E5X0.1 GenPept UniProtKB/Swiss-Prot:G5E5X0

Gene LinkOut

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