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SETBP1 SET binding protein 1 [ Bos taurus (domestic cattle) ]

Gene ID: 617265, updated on 30-Jan-2025
Official Symbol
SETBP1provided by VGNC
Official Full Name
SET binding protein 1provided by VGNC
Primary source
VGNC:VGNC:34491
See related
BGD:BT21768; EnsemblRapid:ENSBTAG00070023607
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See SETBP1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 24 NC_037351.1 (44277079..44686107)

Chromosome 24 - NC_037351.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101902809 Neighboring gene glutamine synthetase pseudogene Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene uncharacterized LOC112444200

Genomic Sequence:
NC_037351.1 Chromosome 24 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Clone Names

  • MGC157398

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
SET binding protein 1; SET-binding protein
Names
A20-binding inhibitor of NF-kappaB activation 2

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037351.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    44277079..44686107
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881067.1 → XP_059737050.1  SET-binding protein isoform X1

    UniProtKB/TrEMBL
    A0AAA9RWZ4
    Related
    ENSBTAP00070031964.1, ENSBTAT00070053169.1

  2. XM_024984548.2 → XP_024840316.1  SET-binding protein isoform X2

    UniProtKB/TrEMBL
    A0AAA9RWZ4, F1MHB3
    Related
    ENSBTAP00070031979.1, ENSBTAT00070053196.1

  3. XM_024984552.2 → XP_024840320.1  SET-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A3Q1MXX5

  4. XM_059881068.1 → XP_059737051.1  SET-binding protein isoform X1

    UniProtKB/TrEMBL
    A0AAA9RWZ4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001102310.1: Suppressed sequence

    Description
    NM_001102310.1: This RefSeq was temporarily suppressed because the CDS was partial.
Nucleotide Protein Strain
Heading Accession and Version

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