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TOM1L2 target of myb1 like 2 membrane trafficking protein [ Bos taurus (cattle) ]

Gene ID: 616315, updated on 3-Apr-2024

Summary

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Official Symbol
TOM1L2provided by VGNC
Official Full Name
target of myb1 like 2 membrane trafficking proteinprovided by VGNC
Primary source
VGNC:VGNC:36219
See related
BGD:BT20437; Ensembl:ENSBTAG00000003983
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See TOM1L2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (34556907..34628409)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2 Neighboring gene dynein regulatory complex subunit 3 Neighboring gene sterol regulatory element binding transcription factor 1 Neighboring gene microRNA mir-33b Neighboring gene retinoic acid induced 1 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC157155

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 2
Names
target of myb1-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099154.1 → NP_001092624.1  TOM1-like protein 2

    See identical proteins and their annotated locations for NP_001092624.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142312
    UniProtKB/TrEMBL
    A5PK10, F6R0C0
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:210 → 301
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    34556907..34628409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015458733.3 → XP_015314219.1  TOM1-like protein 2 isoform X1

    Conserved Domains (2) summary
    cd03565
    Location:12 → 185
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:243 → 329
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  2. XM_015458735.3 → XP_015314221.1  TOM1-like protein 2 isoform X5

    Conserved Domains (2) summary
    cd03565
    Location:12 → 185
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:243 → 329
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  3. XM_024980456.2 → XP_024836224.1  TOM1-like protein 2 isoform X3

    Conserved Domains (2) summary
    cd03565
    Location:12 → 185
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:243 → 334
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  4. XM_015458737.3 → XP_015314223.1  TOM1-like protein 2 isoform X7

    Conserved Domains (2) summary
    cd03565
    Location:12 → 185
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:243 → 334
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  5. XM_015458738.3 → XP_015314224.1  TOM1-like protein 2 isoform X12

    Conserved Domains (2) summary
    cd03565
    Location:12 → 185
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:243 → 334
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  6. XM_024980459.2 → XP_024836227.1  TOM1-like protein 2 isoform X8

    Conserved Domains (2) summary
    cd03565
    Location:12 → 179
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:237 → 328
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  7. XM_024980463.2 → XP_024836231.1  TOM1-like protein 2 isoform X13

    Conserved Domains (2) summary
    cd03565
    Location:12 → 179
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:237 → 328
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  8. XM_024980455.2 → XP_024836223.1  TOM1-like protein 2 isoform X2

    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:210 → 296
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  9. XM_005220396.5 → XP_005220453.1  TOM1-like protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A3Q1MMW1
    Related
    ENSBTAP00000078075.1, ENSBTAT00000125414.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:210 → 296
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  10. XM_024980461.2 → XP_024836229.1  TOM1-like protein 2 isoform X10

    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:210 → 296
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  11. XM_024980460.2 → XP_024836228.1  TOM1-like protein 2 isoform X9

    Related
    ENSBTAP00000005206.7, ENSBTAT00000005206.7
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:210 → 301
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  12. XM_005220400.5 → XP_005220457.1  TOM1-like protein 2 isoform X14

    UniProtKB/TrEMBL
    E1BEE0
    Related
    ENSBTAP00000083096.1, ENSBTAT00000118885.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:210 → 301
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  13. XM_005220401.5 → XP_005220458.1  TOM1-like protein 2 isoform X18

    UniProtKB/TrEMBL
    A0A3Q1N3D0, F6R0C0
    Related
    ENSBTAP00000063956.1, ENSBTAT00000076384.2
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:210 → 301
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  14. XM_059878255.1 → XP_059734238.1  TOM1-like protein 2 isoform X4

  15. XM_024980462.2 → XP_024836230.1  TOM1-like protein 2 isoform X11

    Conserved Domains (2) summary
    cd03565
    Location:12 → 146
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:204 → 295
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  16. XM_024980465.2 → XP_024836233.1  TOM1-like protein 2 isoform X16

    Related
    ENSBTAP00000077202.1, ENSBTAT00000118029.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 146
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:204 → 295
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  17. XM_024980466.2 → XP_024836234.1  TOM1-like protein 2 isoform X19

    UniProtKB/TrEMBL
    F6R0C0
    Conserved Domains (2) summary
    cd03565
    Location:12 → 146
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:204 → 295
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  18. XM_059878257.1 → XP_059734240.1  TOM1-like protein 2 isoform X15

    Related
    ENSBTAP00000005210.7, ENSBTAT00000005210.7

  19. XM_059878258.1 → XP_059734241.1  TOM1-like protein 2 isoform X17

Nucleotide Protein Strain
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