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ACER3 alkaline ceramidase 3 [ Bos taurus (cattle) ]

Gene ID: 615110, updated on 5-Mar-2024

Summary

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Official Symbol
ACER3provided by VGNC
Official Full Name
alkaline ceramidase 3provided by VGNC
Primary source
VGNC:VGNC:25538
See related
BGD:BT26679; Ensembl:ENSBTAG00000017218
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
PHCA
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (56246807..56404498)

Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112441534 Neighboring gene basic proline-rich protein-like Neighboring gene tsukushi, small leucine rich proteoglycan Neighboring gene heterogeneous nuclear ribonucleoprotein K-like Neighboring gene bcl-2-like protein 1 Neighboring gene uncharacterized LOC132342348

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC179542

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phytoceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phytosphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 3
Names
phytoceramidase, alkaline
NP_001095755.1
XP_005216374.1
XP_024831300.1
XP_059730949.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102285.1 → NP_001095755.1  alkaline ceramidase 3

    See identical proteins and their annotated locations for NP_001095755.1

    Status: PROVISIONAL

    Source sequence(s)
    BC151564
    UniProtKB/TrEMBL
    A7MBH7
    Related
    ENSBTAP00000051467.3, ENSBTAT00000052101.4
    Conserved Domains (1) summary
    pfam05875
    Location:9 → 259
    Ceramidase; Ceramidase

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    56246807..56404498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005216317.5 → XP_005216374.1  alkaline ceramidase 3 isoform X2

    Related
    ENSBTAP00000091841.1, ENSBTAT00000116689.1
    Conserved Domains (1) summary
    pfam05875
    Location:9 → 295
    Ceramidase; Ceramidase

  2. XM_024975532.2 → XP_024831300.1  alkaline ceramidase 3 isoform X1

    Conserved Domains (1) summary
    pfam05875
    Location:1 → 217
    Ceramidase

  3. XM_059874966.1 → XP_059730949.1  alkaline ceramidase 3 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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