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HTT huntingtin [ Bos taurus (cattle) ]

Gene ID: 615059, updated on 14-Jan-2019

Summary

Official Symbol
HTTprovided by VGNC
Official Full Name
huntingtinprovided by VGNC
Primary source
VGNC:VGNC:30007
See related
BGD:BT10429; Ensembl:ENSBTAG00000001506
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs

Genomic context

See HTT in Genome Data Viewer
Location:
chromosome: 6
Exon count:
67
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 6 NC_037333.1 (115600426..115724160, complement)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 6 AC_000163.1 (107673062..107840722, complement)

Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene HGF activator Neighboring gene regulator of G protein signaling 12 Neighboring gene Myb/SANT DNA binding domain containing 1 Neighboring gene microRNA mir-2451 Neighboring gene microRNA mir-2450a Neighboring gene microRNA mir-2450b Neighboring gene microRNA mir-2450d Neighboring gene microRNA mir-2450c Neighboring gene G protein-coupled receptor kinase 4 Neighboring gene NOP14 nucleolar protein

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Huntington's disease, organism-specific biosystem (from KEGG)
    Huntington's disease, organism-specific biosystemHuntington disease (HD) is an autosomal-dominant neurodegenerative disorder that primarily affects medium spiny striatal neurons (MSN). The symptoms are choreiform, involuntary movements, personality...
  • Huntington's disease, conserved biosystem (from KEGG)
    Huntington's disease, conserved biosystemHuntington disease (HD) is an autosomal-dominant neurodegenerative disorder that primarily affects medium spiny striatal neurons (MSN). The symptoms are choreiform, involuntary movements, personality...

General gene information

Markers

Homology

General protein information

Preferred Names
huntingtin
Names
solute carrier family 6 (neurotransmitter transporter, serotonin), member 4

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037333.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    115600426..115724160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002688430.5XP_002688476.2  huntingtin isoform X1

    Related
    ENSBTAP00000001972.6, ENSBTAT00000001972.6
    Conserved Domains (2) summary
    sd00044
    Location:115137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:15041542
    DUF3652; Huntingtin protein region
  2. XM_024993718.1XP_024849486.1  huntingtin isoform X2

    Related
    ENSBTAP00000064376.1, ENSBTAT00000075932.1
    Conserved Domains (2) summary
    sd00044
    Location:115137
    HEAT; HEAT repeat [structural motif]
    pfam12372
    Location:14881526
    DUF3652; Huntingtin protein region

RNA

  1. XR_003035245.1 RNA Sequence

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