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CLEC16A C-type lectin domain containing 16A [ Bos taurus (domestic cattle) ]

Gene ID: 615054, updated on 30-Jan-2025
Official Symbol
CLEC16Aprovided by VGNC
Official Full Name
C-type lectin domain containing 16Aprovided by VGNC
Primary source
VGNC:VGNC:27426
See related
BGD:BT17948; EnsemblRapid:ENSBTAG00070026605
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See CLEC16A in Genome Data Viewer
Location:
chromosome: 25
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (9620829..9855652)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene class II major histocompatibility complex transactivator Neighboring gene Dexi homolog Neighboring gene uncharacterized LOC101907141 Neighboring gene uncharacterized LOC132343841 Neighboring gene suppressor of cytokine signaling 1

Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein CLEC16A
Names
C-type lectin domain family 16 member A

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    9620829..9855652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881547.1 → XP_059737530.1  protein CLEC16A isoform X5

    UniProtKB/TrEMBL
    A0AAA9T930

  2. XM_059881546.1 → XP_059737529.1  protein CLEC16A isoform X3

    UniProtKB/TrEMBL
    A0AAA9T930

  3. XM_005224670.5 → XP_005224727.1  protein CLEC16A isoform X1

    See identical proteins and their annotated locations for XP_005224727.1

    UniProtKB/TrEMBL
    A0A3Q1LW98, A0AAA9T930
    Related
    ENSBTAP00070035804.1, ENSBTAT00070060353.1
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; uncharacterized conserved protein

  4. XM_005224672.5 → XP_005224729.1  protein CLEC16A isoform X2

    See identical proteins and their annotated locations for XP_005224729.1

    UniProtKB/TrEMBL
    A0AAA9T930
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; uncharacterized conserved protein

  5. XM_024985300.2 → XP_024841068.1  protein CLEC16A isoform X4

    UniProtKB/TrEMBL
    A0AAA9TY44, F1MQK7
    Related
    ENSBTAP00070035761.1, ENSBTAT00070060270.1
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; Uncharacterized conserved protein
Nucleotide Protein Strain
Heading Accession and Version

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