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ITGB3BP integrin subunit beta 3 binding protein [ Bos taurus (domestic cattle) ]

Gene ID: 614469, updated on 20-Feb-2025
Official Symbol
ITGB3BPprovided by VGNC
Official Full Name
integrin subunit beta 3 binding proteinprovided by VGNC
Primary source
VGNC:VGNC:30328
See related
BGD:BT27019; EnsemblRapid:ENSBTAG00070001906
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See ITGB3BP in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (82052244..82157908)

Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase 1-like Neighboring gene EF-hand calcium binding domain 7 Neighboring gene ALG6 alpha-1,3-glucosyltransferase Neighboring gene forkhead box D3 Neighboring gene small ribosomal subunit protein uS2-like

Genomic Sequence:
NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in CENP-A containing chromatin assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
centromere protein R
Names
beta3-endonexin
integrin beta 3 binding protein (beta3-endonexin)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001434823.1 → NP_001421752.1  centromere protein R

    Status: VALIDATED

    Source sequence(s)
    NKLS02000003
    UniProtKB/TrEMBL
    A0AAA9TNM6, Q2KIL6
    Related
    ENSBTAP00070002495.1, ENSBTAT00070004429.1

RNA

  1. NR_198863.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    NKLS02000003

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    82052244..82157908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005204522.4 → XP_005204579.1  centromere protein R isoform X4

    UniProtKB/TrEMBL
    A0AAA9TNM6, A0AAA9U2T8
    Related
    ENSBTAP00070002497.1, ENSBTAT00070004432.1
    Conserved Domains (1) summary
    pfam06729
    Location:27 → 162
    CENP-R; Kinetochore component, CENP-R

  2. XM_005204521.5 → XP_005204578.1  centromere protein R isoform X1

    UniProtKB/TrEMBL
    A0A3Q1NKE0, A0AAA9RWL1
    Related
    ENSBTAP00070002487.1, ENSBTAT00070004416.1
    Conserved Domains (1) summary
    pfam06729
    Location:27 → 162
    CENP-R; Kinetochore component, CENP-R

  3. XM_059884850.1 → XP_059740833.1  centromere protein R isoform X2

    UniProtKB/TrEMBL
    A0AAA9TNM6

RNA

  1. XR_009493813.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials