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dkc1 dyskeratosis congenita 1, dyskerin [ Danio rerio (zebrafish) ]

Gene ID: 613144, updated on 2-Apr-2017
Official Symbol
dkc1provided by ZNC
Official Full Name
dyskeratosis congenita 1, dyskerinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-031118-120
See related
Ensembl:ENSDARG00000016484 Vega:OTTDARG00000028340
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fv62a07; wu:fa28f10; wu:fc87a02; wu:fi24a05; wu:fv62a07; zgc:110395
Orthologs
Location:
chromosome: 21
Exon count:
15
Annotation release Status Assembly Chr Location
105 current GRCz10 (GCF_000002035.5) 21 NC_007132.6 (43706840..43721513)
103 previous assembly Zv9 (GCF_000002035.4) 21 NC_007132.5 (42107794..42122467)

Chromosome 21 - NC_007132.6Genomic Context describing neighboring genes Neighboring gene si:ch211-263m18.4 Neighboring gene trimethyllysine hydroxylase, epsilon Neighboring gene PDZ and LIM domain 4 Neighboring gene colony stimulating factor 1 receptor, b

Markers

Homology

Clone Names

  • MGC110395

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
pseudouridine synthase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
RNA modification IEA
Inferred from Electronic Annotation
more info
 
RNA processing IEA
Inferred from Electronic Annotation
more info
 
box H/ACA snoRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
 
definitive hemopoiesis IGI
Inferred from Genetic Interaction
more info
PubMed 
definitive hemopoiesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA pseudouridine synthesis IBA
Inferred from Biological aspect of Ancestor
more info
 
pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 
rRNA processing IMP
Inferred from Mutant Phenotype
more info
PubMed 
rRNA pseudouridine synthesis IBA
Inferred from Biological aspect of Ancestor
more info
 
snRNA pseudouridine synthesis IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
box H/ACA snoRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
 
Preferred Names
H/ACA ribonucleoprotein complex subunit 4
Names
fc87a02
fi24a05

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033107.2NP_001028279.2  H/ACA ribonucleoprotein complex subunit 4

    Status: VALIDATED

    Source sequence(s)
    AI477080, AI477818, BC047840, CR792441, CV103822, EB834134
    UniProtKB/TrEMBL
    F1Q749, Q7ZUT3
    Related
    ENSDARP00000007628.9, OTTDARP00000030877, ENSDART00000017176.9, OTTDART00000038529
    Conserved Domains (4) summary
    cd02572
    Location:83265
    PseudoU_synth_hDyskerin; Pseudouridine synthase, human dyskerin like
    TIGR00425
    Location:51376
    CBF5; rRNA pseudouridine synthase, putative
    pfam01472
    Location:292365
    PUA; PUA domain
    pfam08068
    Location:44101
    DKCLD; DKCLD (NUC011) domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007132.6 Reference GRCz10 Primary Assembly

    Range
    43706840..43721513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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