Format

Send to:

Choose Destination

bhlhe41 basic helix-loop-helix family member e41 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 613096, updated on 16-Nov-2019

Summary

Official Symbol
bhlhe41provided by Xenbase
Official Full Name
basic helix-loop-helix family member e41provided by Xenbase
Primary source
Xenbase:XB-GENE-994875
See related
Ensembl:ENSXETG00000007891
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
dec2; bhlhb3; sharp1; sharp-1
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See bhlhe41 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684209.1 (456..3629)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004669094.1 (456..3629)

NW_016684209.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

General gene information

Homology

Clone Names

  • MGC108143

General protein information

Preferred Names
class E basic helix-loop-helix protein 41
Names
basic helix-loop-helix domain containing, class B, 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001032333.1NP_001027504.1  class E basic helix-loop-helix protein 41

    See identical proteins and their annotated locations for NP_001027504.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098080
    UniProtKB/TrEMBL
    Q4V788
    Related
    ENSXETP00000029101.1, ENSXETT00000018715.1
    Conserved Domains (2) summary
    smart00511
    Location:128168
    ORANGE; Orange domain
    cd00083
    Location:41103
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NW_016684209.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    456..3629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center