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NPIPB13 nuclear pore complex interacting protein family, member B13 [ Homo sapiens (human) ]

Gene ID: 613037, updated on 5-Jan-2022

Summary

Official Symbol
NPIPB13provided by HGNC
Official Full Name
nuclear pore complex interacting protein family, member B13provided by HGNC
Primary source
HGNC:HGNC:41989
See related
Ensembl:ENSG00000198064
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Located in nucleoplasm. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Ubiquitous expression in skin (RPKM 20.3), bone marrow (RPKM 13.4) and 24 other tissues See more
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Genomic context

See NPIPB13 in Genome Data Viewer
Location:
16p11.2
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (30222897..30248479, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (30234056..30259734, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene SLX1A-SULT1A3 readthrough (NMD candidate) Neighboring gene uncharacterized LOC101929894 Neighboring gene sulfotransferase family 1A member 3 Neighboring gene SAGA complex associated factor 29 pseudogene Neighboring gene SMG1 pseudogene 5 Neighboring gene carbonic anhydrase 5A pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
nuclear pore complex-interacting protein family member B13
Names
Putative NPIP-like protein LOC613037
nuclear pore complex interacting protein member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001321892.3NP_001308821.1  nuclear pore complex-interacting protein family member B13

    Status: VALIDATED

    Source sequence(s)
    AC106782
    Consensus CDS
    CCDS81968.1
    UniProtKB/Swiss-Prot
    A6NJU9
    Conserved Domains (3) summary
    PHA03307
    Location:7311130
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam06409
    Location:46303
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:241
    AFD_class_I; Adenylate forming domain, Class I superfamily
  2. NM_001395859.2NP_001382788.1  nuclear pore complex-interacting protein family member B13

    Status: VALIDATED

    Source sequence(s)
    AC106782
    Conserved Domains (3) summary
    PHA03307
    Location:7311130
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam06409
    Location:46303
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:241
    AFD_class_I; Adenylate forming domain, Class I superfamily
  3. NM_001395860.2NP_001382789.1  nuclear pore complex-interacting protein family member B13

    Status: VALIDATED

    Source sequence(s)
    AC106782
    Conserved Domains (3) summary
    PHA03307
    Location:7311130
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam06409
    Location:46303
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:241
    AFD_class_I; Adenylate forming domain, Class I superfamily
  4. NM_001395861.2NP_001382790.1  nuclear pore complex-interacting protein family member B13

    Status: VALIDATED

    Source sequence(s)
    AC106782
    Related
    ENSP00000429734.1, ENST00000520915.5
    Conserved Domains (3) summary
    PHA03307
    Location:7311130
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam06409
    Location:46303
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:241
    AFD_class_I; Adenylate forming domain, Class I superfamily

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    30222897..30248479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_017852933.1 Reference GRCh38.p13 PATCHES

    Range
    1676763..1702739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_002555.2: Suppressed sequence

    Description
    NR_002555.2: This RefSeq was removed because it is now thought that this gene does encode a protein.
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