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HAVCR1 hepatitis A virus cellular receptor 1 [ Canis lupus familiaris (dog) ]

Gene ID: 612069, updated on 26-Sep-2018

Summary

Gene symbol
HAVCR1
Gene description
hepatitis A virus cellular receptor 1
See related
Ensembl:ENSCAFG00000023455
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis

Genomic context

See HAVCR1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
105 current CanFam3.1 (GCF_000002285.3) 4 NC_006586.3 (53012223..53066611)

Chromosome 4 - NC_006586.3Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 71 member B Neighboring gene hepatitis A virus cellular receptor 2 Neighboring gene mediator complex subunit 7 Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene sarcoglycan delta Neighboring gene uncharacterized LOC111095572

Genomic regions, transcripts, and products

Genomic Sequence:
NC_006586.3 Chromosome 4 Reference CanFam3.1 Primary Assembly

General protein information

Preferred Names
hepatitis A virus cellular receptor 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205114.1NP_001192043.1  hepatitis A virus cellular receptor 1 precursor

    See identical proteins and their annotated locations for NP_001192043.1

    Status: PROVISIONAL

    Source sequence(s)
    HQ412642
    UniProtKB/TrEMBL
    F1CME9
    Related
    ENSCAFP00000037633.1, ENSCAFT00000049156.2
    Conserved Domains (2) summary
    smart00410
    Location:23110
    IG_like; Immunoglobulin like
    pfam07686
    Location:24121
    V-set; Immunoglobulin V-set domain

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CanFam3.1 Primary Assembly

Genomic

  1. NC_006586.3 Reference CanFam3.1 Primary Assembly

    Range
    53012223..53066611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022417343.1XP_022273051.1  hepatitis A virus cellular receptor 1 isoform X1

    Conserved Domains (1) summary
    pfam07686
    Location:52154
    V-set; Immunoglobulin V-set domain
  2. XM_022417347.1XP_022273055.1  hepatitis A virus cellular receptor 1 isoform X4

    Conserved Domains (1) summary
    pfam07686
    Location:32134
    V-set; Immunoglobulin V-set domain
  3. XM_022417344.1XP_022273052.1  hepatitis A virus cellular receptor 1 isoform X1

    Conserved Domains (1) summary
    pfam07686
    Location:52154
    V-set; Immunoglobulin V-set domain
  4. XM_022417348.1XP_022273056.1  hepatitis A virus cellular receptor 1 isoform X5

    Conserved Domains (1) summary
    pfam07686
    Location:24121
    V-set; Immunoglobulin V-set domain
  5. XM_022417345.1XP_022273053.1  hepatitis A virus cellular receptor 1 isoform X2

    Related
    ENSCAFP00000036883.1, ENSCAFT00000044072.2
    Conserved Domains (1) summary
    pfam07686
    Location:24121
    V-set; Immunoglobulin V-set domain
  6. XM_022417346.1XP_022273054.1  hepatitis A virus cellular receptor 1 isoform X3

    Conserved Domains (1) summary
    pfam07686
    Location:24121
    V-set; Immunoglobulin V-set domain
  7. XM_022417350.1XP_022273058.1  hepatitis A virus cellular receptor 1 isoform X7

    Conserved Domains (1) summary
    pfam07686
    Location:24121
    V-set; Immunoglobulin V-set domain
  8. XM_022417349.1XP_022273057.1  hepatitis A virus cellular receptor 1 isoform X6

    Related
    ENSCAFP00000041863.1, ENSCAFT00000042810.2
    Conserved Domains (1) summary
    pfam07686
    Location:24121
    V-set; Immunoglobulin V-set domain
  9. XM_014112770.2XP_013968245.1  hepatitis A virus cellular receptor 1 isoform X2

    UniProtKB/TrEMBL
    F1CMF1
    Conserved Domains (1) summary
    pfam07686
    Location:24121
    V-set; Immunoglobulin V-set domain
  10. XM_005618883.3XP_005618940.1  hepatitis A virus cellular receptor 1 isoform X2

    See identical proteins and their annotated locations for XP_005618940.1

    UniProtKB/TrEMBL
    F1CMF1
    Conserved Domains (1) summary
    pfam07686
    Location:24121
    V-set; Immunoglobulin V-set domain
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