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SLC28A1 solute carrier family 28 member 1 [ Canis lupus familiaris (dog) ]

Gene ID: 609634, updated on 11-Apr-2024

Summary

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Gene symbol
SLC28A1
Gene description
solute carrier family 28 member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (54550502..54597148)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (56769895..56819024)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (54619637..54669008)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (54068688..54118029)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (54277112..54326620)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene SEC11 homolog A, signal peptidase complex subunit Neighboring gene zinc finger protein 592 Neighboring gene alpha kinase 3 Neighboring gene 60S ribosomal protein L17-like Neighboring gene small nucleolar RNA U3 Neighboring gene phosphodiesterase 8A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyrimidine- and adenosine-specific:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytidine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleoside transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pyrimidine nucleobase transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in uridine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/nucleoside cotransporter 1
Names
solute carrier family 28 (sodium-coupled nucleoside transporter), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    54550502..54597148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038660590.1 → XP_038516518.1  sodium/nucleoside cotransporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QAF4
    Conserved Domains (1) summary
    TIGR00804
    Location:219 → 571
    nupC; nucleoside transporter

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    54068688..54118029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038471978.1 → XP_038327906.1  sodium/nucleoside cotransporter 1 isoform X3

    Conserved Domains (1) summary
    TIGR00804
    Location:194 → 596
    nupC; nucleoside transporter

  2. XM_038471981.1 → XP_038327909.1  sodium/nucleoside cotransporter 1 isoform X6

    Conserved Domains (1) summary
    TIGR00804
    Location:194 → 551
    nupC; nucleoside transporter

  3. XM_038471980.1 → XP_038327908.1  sodium/nucleoside cotransporter 1 isoform X5

    Conserved Domains (1) summary
    TIGR00804
    Location:146 → 557
    nupC; nucleoside transporter

  4. XM_038471977.1 → XP_038327905.1  sodium/nucleoside cotransporter 1 isoform X2

    Conserved Domains (1) summary
    TIGR00804
    Location:194 → 605
    nupC; nucleoside transporter

  5. XM_038471982.1 → XP_038327910.1  sodium/nucleoside cotransporter 1 isoform X7

    Conserved Domains (1) summary
    TIGR00804
    Location:132 → 543
    nupC; nucleoside transporter

  6. XM_038471979.1 → XP_038327907.1  sodium/nucleoside cotransporter 1 isoform X4

    Conserved Domains (1) summary
    TIGR00804
    Location:180 → 591
    nupC; nucleoside transporter

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    54277112..54326620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038597244.1 → XP_038453172.1  sodium/nucleoside cotransporter 1 isoform X9

  2. XM_038597248.1 → XP_038453176.1  sodium/nucleoside cotransporter 1 isoform X12

  3. XM_038597246.1 → XP_038453174.1  sodium/nucleoside cotransporter 1 isoform X11

  4. XM_038597243.1 → XP_038453171.1  sodium/nucleoside cotransporter 1 isoform X8

  5. XM_038597249.1 → XP_038453177.1  sodium/nucleoside cotransporter 1 isoform X13

  6. XM_038597245.1 → XP_038453173.1  sodium/nucleoside cotransporter 1 isoform X10

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    54619637..54669008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038532917.1 → XP_038388845.1  sodium/nucleoside cotransporter 1 isoform X15

    UniProtKB/TrEMBL
    A0A8C0QAF4

  2. XM_038532920.1 → XP_038388848.1  sodium/nucleoside cotransporter 1 isoform X18

    UniProtKB/TrEMBL
    A0A8P0PGV5

  3. XM_038532919.1 → XP_038388847.1  sodium/nucleoside cotransporter 1 isoform X17

    UniProtKB/TrEMBL
    A0A8P0TSQ5

  4. XM_038532916.1 → XP_038388844.1  sodium/nucleoside cotransporter 1 isoform X14

    UniProtKB/TrEMBL
    A0A8C0QAF4

  5. XM_038532921.1 → XP_038388849.1  sodium/nucleoside cotransporter 1 isoform X19

    UniProtKB/TrEMBL
    A0A8P0TSQ5

  6. XM_038532918.1 → XP_038388846.1  sodium/nucleoside cotransporter 1 isoform X16

    UniProtKB/TrEMBL
    A0A8C0LZS3, A0A8C0QAF4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    56769895..56819024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038475940.1 → XP_038331868.1  sodium/nucleoside cotransporter 1 isoform X21

    UniProtKB/TrEMBL
    A0A8C0LZS3, A0A8C0QAF4
    Conserved Domains (1) summary
    TIGR00804
    Location:194 → 596
    nupC; nucleoside transporter

  2. XM_038475964.1 → XP_038331892.1  sodium/nucleoside cotransporter 1 isoform X24

    UniProtKB/TrEMBL
    A0A8P0PGV5, A0A8P0PKB3
    Conserved Domains (1) summary
    TIGR00804
    Location:194 → 551
    nupC; nucleoside transporter

  3. XM_038475959.1 → XP_038331887.1  sodium/nucleoside cotransporter 1 isoform X23

    UniProtKB/TrEMBL
    A0A8P0TSQ5
    Conserved Domains (1) summary
    TIGR00804
    Location:146 → 557
    nupC; nucleoside transporter

  4. XM_038475935.1 → XP_038331863.1  sodium/nucleoside cotransporter 1 isoform X20

    UniProtKB/TrEMBL
    A0A8C0QAF4, A0A8P0SHJ3
    Conserved Domains (1) summary
    TIGR00804
    Location:194 → 605
    nupC; nucleoside transporter

  5. XM_038475965.1 → XP_038331893.1  sodium/nucleoside cotransporter 1 isoform X25

    UniProtKB/TrEMBL
    A0A8P0TSQ5
    Conserved Domains (1) summary
    TIGR00804
    Location:132 → 543
    nupC; nucleoside transporter

  6. XM_038475948.1 → XP_038331876.1  sodium/nucleoside cotransporter 1 isoform X22

    UniProtKB/TrEMBL
    A0A8C0KUE1, A0A8C0LZS3, A0A8C0QAF4, A0A8P0T602
    Conserved Domains (1) summary
    TIGR00804
    Location:180 → 591
    nupC; nucleoside transporter
Nucleotide Protein
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