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COL13A1 collagen type XIII alpha 1 chain [ Canis lupus familiaris (dog) ]

Gene ID: 609516, updated on 25-Jul-2026
Official Symbol
COL13A1provided by VGNC
Official Full Name
collagen type XIII alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:39459
See related
Ensembl:ENSCAFG00845003810 RGD:12206267
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See COL13A1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
43
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (21113705..21262719)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (20971110..21119964)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (21561379..21710027)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (21012409..21161238)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (21216918..21365710)

Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119871624 Neighboring gene family with sequence similarity 241 member B Neighboring gene uncharacterized LOC111095470 Neighboring gene uncharacterized LOC102157087 Neighboring gene uncharacterized LOC119873933 Neighboring gene macroH2A.2 histone Neighboring gene AIF family member 2

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Markers

Homology

Preferred Names
collagen alpha-1(XIII) chain

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051808.1 Reference ROS_Cfam_1.0

    Range
    21113705..21262719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038662793.1 → XP_038518721.1  collagen alpha-1(XIII) chain isoform X8

    Related
    ENSCAFP00845005532.1, ENSCAFT00845006942.1
    Conserved Domains (1) summary
    pfam01391
    Location:509 → 563
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_038662805.1 → XP_038518733.1  collagen alpha-1(XIII) chain isoform X3

    Conserved Domains (1) summary
    pfam01391
    Location:595 → 649
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_038662790.1 → XP_038518718.1  collagen alpha-1(XIII) chain isoform X5

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_038662791.1 → XP_038518719.1  collagen alpha-1(XIII) chain isoform X6

    Conserved Domains (1) summary
    pfam01391
    Location:515 → 569
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_038662798.1 → XP_038518726.1  collagen alpha-1(XIII) chain isoform X12

    Conserved Domains (1) summary
    pfam01391
    Location:496 → 550
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_038662806.1 → XP_038518734.1  collagen alpha-1(XIII) chain isoform X4

    Related
    ENSCAFP00845005594.1, ENSCAFT00845007011.1
    Conserved Domains (1) summary
    pfam01391
    Location:604 → 658
    Collagen; Collagen triple helix repeat (20 copies)

  7. XM_038662804.1 → XP_038518732.1  collagen alpha-1(XIII) chain isoform X17

    Related
    ENSCAFP00845005575.1, ENSCAFT00845006988.1
    Conserved Domains (1) summary
    pfam01391
    Location:595 → 649
    Collagen; Collagen triple helix repeat (20 copies)

  8. XM_038662792.1 → XP_038518720.1  collagen alpha-1(XIII) chain isoform X7

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  9. XM_038662799.1 → XP_038518727.1  collagen alpha-1(XIII) chain isoform X13

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  10. XM_038662794.1 → XP_038518722.1  collagen alpha-1(XIII) chain isoform X9

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  11. XM_038662797.1 → XP_038518725.1  collagen alpha-1(XIII) chain isoform X1

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  12. XM_038662801.1 → XP_038518729.1  collagen alpha-1(XIII) chain isoform X2

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  13. XM_038662800.1 → XP_038518728.1  collagen alpha-1(XIII) chain isoform X14

    Conserved Domains (2) summary
    TIGR00927
    Location:397 → 601
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:643 → 693
    Collagen; Collagen triple helix repeat (20 copies)

  14. XM_038662795.1 → XP_038518723.1  collagen alpha-1(XIII) chain isoform X10

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

  15. XM_038662802.1 → XP_038518730.1  collagen alpha-1(XIII) chain isoform X15

    UniProtKB/TrEMBL
    A0A8I3MS31
    Related
    ENSCAFP00845005545.1, ENSCAFT00845006956.1
    Conserved Domains (2) summary
    TIGR00927
    Location:385 → 589
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:631 → 681
    Collagen; Collagen triple helix repeat (20 copies)

  16. XM_038662803.1 → XP_038518731.1  collagen alpha-1(XIII) chain isoform X16

    UniProtKB/TrEMBL
    A0A8I3MSW5
    Related
    ENSCAFP00845005561.1, ENSCAFT00845006973.1
    Conserved Domains (2) summary
    TIGR00927
    Location:388 → 592
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:565 → 619
    Collagen; Collagen triple helix repeat (20 copies)

  17. XM_038662796.1 → XP_038518724.1  collagen alpha-1(XIII) chain isoform X11

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049264.1 Alternate UMICH_Zoey_3.1

    Range
    21012409..21161238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038473124.1 → XP_038329052.1  

    Conserved Domains (1) summary
    pfam01391
    Location:509 → 563
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_038473136.1 → XP_038329064.1  

    Conserved Domains (1) summary
    pfam01391
    Location:595 → 649
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_038473121.1 → XP_038329049.1  

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_038473122.1 → XP_038329050.1  

    Conserved Domains (1) summary
    pfam01391
    Location:515 → 569
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_038473129.1 → XP_038329057.1  

    Conserved Domains (1) summary
    pfam01391
    Location:496 → 550
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_038473137.1 → XP_038329065.1  

    Conserved Domains (1) summary
    pfam01391
    Location:604 → 658
    Collagen; Collagen triple helix repeat (20 copies)

  7. XM_038473135.1 → XP_038329063.1  

    Conserved Domains (1) summary
    pfam01391
    Location:595 → 649
    Collagen; Collagen triple helix repeat (20 copies)

  8. XM_038473123.1 → XP_038329051.1  

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  9. XM_038473130.1 → XP_038329058.1  

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  10. XM_038473125.1 → XP_038329053.1  

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  11. XM_038473128.1 → XP_038329056.1  

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  12. XM_038473132.1 → XP_038329060.1  

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  13. XM_038473131.1 → XP_038329059.1  

    Conserved Domains (2) summary
    TIGR00927
    Location:397 → 601
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:643 → 693
    Collagen; Collagen triple helix repeat (20 copies)

  14. XM_038473126.1 → XP_038329054.1  

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

  15. XM_038473133.1 → XP_038329061.1  

    Conserved Domains (2) summary
    TIGR00927
    Location:385 → 589
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:631 → 681
    Collagen; Collagen triple helix repeat (20 copies)

  16. XM_038473134.1 → XP_038329062.1  

    Conserved Domains (2) summary
    TIGR00927
    Location:388 → 592
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:565 → 619
    Collagen; Collagen triple helix repeat (20 copies)

  17. XM_038473127.1 → XP_038329055.1  

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

    Range
    21216918..21365710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038598490.1 → XP_038454418.1  

    Conserved Domains (1) summary
    pfam01391
    Location:509 → 563
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_038598487.1 → XP_038454415.1  

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_038598488.1 → XP_038454416.1  

    Conserved Domains (1) summary
    pfam01391
    Location:515 → 569
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_038598494.1 → XP_038454422.1  

    Conserved Domains (1) summary
    pfam01391
    Location:496 → 550
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_038598502.1 → XP_038454430.1  

    Conserved Domains (1) summary
    pfam01391
    Location:595 → 649
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_038598489.1 → XP_038454417.1  

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  7. XM_038598495.1 → XP_038454423.1  

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  8. XM_038598491.1 → XP_038454419.1  

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  9. XM_038598496.1 → XP_038454424.1  

    Conserved Domains (2) summary
    TIGR00927
    Location:397 → 601
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:643 → 693
    Collagen; Collagen triple helix repeat (20 copies)

  10. XM_038598492.1 → XP_038454420.1  

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

  11. XM_038598498.1 → XP_038454426.1  

    Conserved Domains (2) summary
    TIGR00927
    Location:385 → 589
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:631 → 681
    Collagen; Collagen triple helix repeat (20 copies)

  12. XM_038598499.1 → XP_038454427.1  

    Conserved Domains (2) summary
    TIGR00927
    Location:388 → 592
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:565 → 619
    Collagen; Collagen triple helix repeat (20 copies)

  13. XM_038598493.1 → XP_038454421.1  

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

  14. XM_038598500.1 → XP_038454428.1  

    Conserved Domains (1) summary
    pfam01391
    Location:377 → 431
    Collagen; Collagen triple helix repeat (20 copies)

  15. XM_038598501.1 → XP_038454429.1  

    Conserved Domains (1) summary
    pfam01391
    Location:356 → 410
    Collagen; Collagen triple helix repeat (20 copies)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

    Range
    21561379..21710027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038534174.1 → XP_038390102.1  collagen alpha-1(XIII) chain isoform X8

    Conserved Domains (1) summary
    pfam01391
    Location:509 → 563
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_038534187.1 → XP_038390115.1  collagen alpha-1(XIII) chain isoform X3

    Conserved Domains (1) summary
    pfam01391
    Location:595 → 649
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_038534171.1 → XP_038390099.1  collagen alpha-1(XIII) chain isoform X5

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_038534172.1 → XP_038390100.1  collagen alpha-1(XIII) chain isoform X6

    Conserved Domains (1) summary
    pfam01391
    Location:515 → 569
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_038534180.1 → XP_038390108.1  collagen alpha-1(XIII) chain isoform X12

    Conserved Domains (1) summary
    pfam01391
    Location:496 → 550
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_038534188.1 → XP_038390116.1  collagen alpha-1(XIII) chain isoform X4

    Conserved Domains (1) summary
    pfam01391
    Location:604 → 658
    Collagen; Collagen triple helix repeat (20 copies)

  7. XM_038534186.1 → XP_038390114.1  collagen alpha-1(XIII) chain isoform X17

    Conserved Domains (1) summary
    pfam01391
    Location:595 → 649
    Collagen; Collagen triple helix repeat (20 copies)

  8. XM_038534173.1 → XP_038390101.1  collagen alpha-1(XIII) chain isoform X7

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  9. XM_038534181.1 → XP_038390109.1  collagen alpha-1(XIII) chain isoform X13

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  10. XM_038534175.1 → XP_038390103.1  collagen alpha-1(XIII) chain isoform X9

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  11. XM_038534178.1 → XP_038390106.1  collagen alpha-1(XIII) chain isoform X1

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  12. XM_038534183.1 → XP_038390111.1  collagen alpha-1(XIII) chain isoform X2

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  13. XM_038534182.1 → XP_038390110.1  collagen alpha-1(XIII) chain isoform X14

    Conserved Domains (2) summary
    TIGR00927
    Location:397 → 601
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:643 → 693
    Collagen; Collagen triple helix repeat (20 copies)

  14. XM_038534176.1 → XP_038390104.1  collagen alpha-1(XIII) chain isoform X10

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

  15. XM_038534184.1 → XP_038390112.1  collagen alpha-1(XIII) chain isoform X15

    UniProtKB/TrEMBL
    A0A8I3MS31
    Conserved Domains (2) summary
    TIGR00927
    Location:385 → 589
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:631 → 681
    Collagen; Collagen triple helix repeat (20 copies)

  16. XM_038534185.1 → XP_038390113.1  collagen alpha-1(XIII) chain isoform X16

    UniProtKB/TrEMBL
    A0A8I3MSW5
    Conserved Domains (2) summary
    TIGR00927
    Location:388 → 592
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:565 → 619
    Collagen; Collagen triple helix repeat (20 copies)

  17. XM_038534177.1 → XP_038390105.1  collagen alpha-1(XIII) chain isoform X11

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    20971110..21119964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022417510.2 → XP_022273218.1  collagen alpha-1(XIII) chain isoform X8

    Conserved Domains (1) summary
    pfam01391
    Location:509 → 563
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_038490454.1 → XP_038346382.1  collagen alpha-1(XIII) chain isoform X3

    Conserved Domains (1) summary
    pfam01391
    Location:595 → 649
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_014112862.3 → XP_013968337.1  collagen alpha-1(XIII) chain isoform X5

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_022417508.2 → XP_022273216.1  collagen alpha-1(XIII) chain isoform X6

    Conserved Domains (1) summary
    pfam01391
    Location:515 → 569
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_022417515.2 → XP_022273223.1  collagen alpha-1(XIII) chain isoform X12

    Conserved Domains (1) summary
    pfam01391
    Location:496 → 550
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_038490463.1 → XP_038346391.1  collagen alpha-1(XIII) chain isoform X4

    Conserved Domains (1) summary
    pfam01391
    Location:604 → 658
    Collagen; Collagen triple helix repeat (20 copies)

  7. XM_014112868.3 → XP_013968343.1  collagen alpha-1(XIII) chain isoform X17

    Conserved Domains (1) summary
    pfam01391
    Location:595 → 649
    Collagen; Collagen triple helix repeat (20 copies)

  8. XM_022417509.2 → XP_022273217.1  collagen alpha-1(XIII) chain isoform X7

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  9. XM_014112864.3 → XP_013968339.1  collagen alpha-1(XIII) chain isoform X13

    Conserved Domains (1) summary
    pfam01391
    Location:518 → 572
    Collagen; Collagen triple helix repeat (20 copies)

  10. XM_014112863.3 → XP_013968338.1  collagen alpha-1(XIII) chain isoform X9

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  11. XM_038490411.1 → XP_038346339.1  collagen alpha-1(XIII) chain isoform X1

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  12. XM_038490428.1 → XP_038346356.1  collagen alpha-1(XIII) chain isoform X2

    Conserved Domains (1) summary
    pfam01391
    Location:607 → 661
    Collagen; Collagen triple helix repeat (20 copies)

  13. XM_014112866.3 → XP_013968341.1  collagen alpha-1(XIII) chain isoform X14

    Conserved Domains (2) summary
    TIGR00927
    Location:397 → 601
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:643 → 693
    Collagen; Collagen triple helix repeat (20 copies)

  14. XM_022417512.2 → XP_022273220.1  collagen alpha-1(XIII) chain isoform X10

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

  15. XM_014112867.3 → XP_013968342.1  collagen alpha-1(XIII) chain isoform X15

    UniProtKB/TrEMBL
    A0A8I3MS31
    Conserved Domains (2) summary
    TIGR00927
    Location:385 → 589
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:631 → 681
    Collagen; Collagen triple helix repeat (20 copies)

  16. XM_022417521.2 → XP_022273229.1  collagen alpha-1(XIII) chain isoform X16

    UniProtKB/TrEMBL
    A0A8I3MSW5
    Conserved Domains (2) summary
    TIGR00927
    Location:388 → 592
    2A1904; K+-dependent Na+/Ca+ exchanger
    pfam01391
    Location:565 → 619
    Collagen; Collagen triple helix repeat (20 copies)

  17. XM_022417513.2 → XP_022273221.1  collagen alpha-1(XIII) chain isoform X11

    Conserved Domains (1) summary
    pfam01391
    Location:506 → 560
    Collagen; Collagen triple helix repeat (20 copies)

  18. XM_038490445.1 → XP_038346373.1  collagen alpha-1(XIII) chain isoform X20

    Conserved Domains (1) summary
    pfam01391
    Location:377 → 431
    Collagen; Collagen triple helix repeat (20 copies)

  19. XM_038490446.1 → XP_038346374.1  collagen alpha-1(XIII) chain isoform X21

    Conserved Domains (1) summary
    pfam01391
    Location:356 → 410
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
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