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CHAD chondroadherin [ Canis lupus familiaris (dog) ]

Gene ID: 609296, updated on 5-Mar-2024

Summary

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Official Symbol
CHADprovided by VGNC
Official Full Name
chondroadherinprovided by VGNC
Primary source
VGNC:VGNC:39187
See related
Ensembl:ENSCAFG00845012965
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (27192073..27196074, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (25790669..25794670, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (26348569..26352570, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (25959846..25963847, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (26218516..26222527, complement)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L27 Neighboring gene essential meiotic structure-specific endonuclease 1 Neighboring gene leucine rich repeat containing 59 Neighboring gene acyl-CoA synthetase family member 2 Neighboring gene radical S-adenosyl methionine domain containing 1 Neighboring gene uncharacterized LOC119873429

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroadherin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    27192073..27196074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038676846.1 → XP_038532774.1  chondroadherin

    UniProtKB/TrEMBL
    A0A8C0LH86, A0A8C0Z7D5, A0A8I3NIB4
    Related
    ENSCAFP00845018074.1, ENSCAFT00845023053.1
    Conserved Domains (6) summary
    smart00082
    Location:300 → 347
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:106 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:293 → 304
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:53 → 76
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:23 → 49
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:75 → 135
    LRR_8; Leucine rich repeat

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    25959846..25963847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038485888.1 → XP_038341816.1  chondroadherin

    Conserved Domains (6) summary
    smart00082
    Location:300 → 347
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:106 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:293 → 304
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:53 → 76
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:23 → 49
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:75 → 135
    LRR_8; Leucine rich repeat

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    26218516..26222527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038611648.1 → XP_038467576.1  chondroadherin

    Conserved Domains (6) summary
    smart00082
    Location:300 → 347
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:106 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:293 → 304
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:53 → 76
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:23 → 49
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:75 → 135
    LRR_8; Leucine rich repeat

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    26348569..26352570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038547648.1 → XP_038403576.1  chondroadherin

    UniProtKB/TrEMBL
    A0A8C0LH86, A0A8C0Z7D5, A0A8I3NIB4
    Conserved Domains (6) summary
    smart00082
    Location:300 → 347
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:106 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:293 → 304
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:53 → 76
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:23 → 49
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:75 → 135
    LRR_8; Leucine rich repeat

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    25790669..25794670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_847311.7 → XP_852404.2  chondroadherin

    UniProtKB/TrEMBL
    A0A8C0LH86, A0A8C0Z7D5, A0A8I3NIB4
    Conserved Domains (6) summary
    smart00082
    Location:300 → 347
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:106 → 301
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:293 → 304
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:53 → 76
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:23 → 49
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:75 → 135
    LRR_8; Leucine rich repeat
Nucleotide Protein
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