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LACBIDRAFT_319772 glycoside hydrolase family 5 protein [ Laccaria bicolor S238N-H82 ]

Gene ID: 6075221, updated on 28-Dec-2023

Summary

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Gene symbol
LACBIDRAFT_319772
Gene description
glycoside hydrolase family 5 protein
Locus tag
LACBIDRAFT_319772
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Laccaria bicolor S238N-H82 (strain: S238N-H82)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Agaricineae; Hydnangiaceae; Laccaria
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Genomic context

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See LACBIDRAFT_319772 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
16

NW_001889879.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001889879.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Martin F, et al. Nature, 2008 Mar 6. PMID 18322534

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoside hydrolase family 5 protein
XP_001879429.1
  • candidate endoglucanase; contains a CBM1 module

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001889879.1 Reference assembly

    Range
    484984..487458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001879394.1 → XP_001879429.1  glycoside hydrolase family 5 protein [Laccaria bicolor S238N-H82]

    See identical proteins and their annotated locations for XP_001879429.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B0D5M7
    Conserved Domains (2) summary
    pfam00150
    Location:92 → 365
    Cellulase; Cellulase (glycosyl hydrolase family 5)
    pfam00734
    Location:25 → 51
    CBM_1; Fungal cellulose binding domain
Nucleotide Protein
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