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ZFAND3 zinc finger AN1-type containing 3 [ Homo sapiens (human) ]

Gene ID: 60685, updated on 4-Nov-2022

Summary

Official Symbol
ZFAND3provided by HGNC
Official Full Name
zinc finger AN1-type containing 3provided by HGNC
Primary source
HGNC:HGNC:18019
See related
Ensembl:ENSG00000156639 MIM:607455; AllianceGenome:HGNC:18019
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TEX27
Summary
Predicted to enable DNA binding activity and zinc ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 29.7), thyroid (RPKM 22.9) and 25 other tissues See more
Orthologs
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Genomic context

See ZFAND3 in Genome Data Viewer
Location:
6p21.2
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (37819727..38154624)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (37644497..37979293)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (37787503..38122400)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory regions 13021 and 15353 Neighboring gene ZFAND3 divergent transcript Neighboring gene RNA, 7SL, cytoplasmic 285, pseudogene Neighboring gene RNA, variant U1 small nuclear 33 Neighboring gene Sharpr-MPRA regulatory region 1536 Neighboring gene uncharacterized LOC124901314 Neighboring gene uncharacterized LOC124901315 Neighboring gene small nucleolar RNA SNORD45 Neighboring gene BTB domain containing 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
EBI GWAS Catalog
Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.
EBI GWAS Catalog
Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ13222, FLJ17799

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
AN1-type zinc finger protein 3
Names
testis expressed sequence 27
testis-expressed protein 27
zinc finger, AN1-type domain 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001410904.1NP_001397833.1  AN1-type zinc finger protein 3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL121574, AL133377, AL589655
    Consensus CDS
    CCDS93913.1
    UniProtKB/TrEMBL
    E2QRF5
  2. NM_021943.3NP_068762.1  AN1-type zinc finger protein 3 isoform 1

    See identical proteins and their annotated locations for NP_068762.1

    Status: VALIDATED

    Source sequence(s)
    AI817165, AL137302, AW023961, BC031481, BP305887
    Consensus CDS
    CCDS4836.1
    UniProtKB/Swiss-Prot
    Q5SZZ1, Q9H8U3
    UniProtKB/TrEMBL
    A0A024RD12
    Related
    ENSP00000287218.4, ENST00000287218.9
    Conserved Domains (2) summary
    pfam01428
    Location:160194
    zf-AN1; AN1-like Zinc finger
    pfam01754
    Location:1936
    zf-A20; A20-like zinc finger

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    37819727..38154624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011514790.3XP_011513092.1  AN1-type zinc finger protein 3 isoform X3

    Conserved Domains (1) summary
    pfam01754
    Location:1936
    zf-A20; A20-like zinc finger
  2. XM_005249269.3XP_005249326.1  AN1-type zinc finger protein 3 isoform X2

    UniProtKB/TrEMBL
    E2QRF5
    Related
    ENSP00000362489.2, ENST00000373391.6
    Conserved Domains (3) summary
    PLN02328
    Location:46136
    PLN02328; lysine-specific histone demethylase 1 homolog
    pfam01428
    Location:138172
    zf-AN1; AN1-like Zinc finger
    pfam01754
    Location:1936
    zf-A20; A20-like zinc finger
  3. XM_017011171.3XP_016866660.1  AN1-type zinc finger protein 3 isoform X1

    Conserved Domains (1) summary
    pfam01428
    Location:144178
    zf-AN1; AN1-like Zinc finger

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    37644497..37979293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)