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Otx2os1 orthodenticle homeobox 2 opposite strand 1 [ Mus musculus (house mouse) ]

Gene ID: 606497, updated on 8-Feb-2024

Summary

Official Symbol
Otx2os1provided by MGI
Official Full Name
orthodenticle homeobox 2 opposite strand 1provided by MGI
Primary source
MGI:MGI:3583292
See related
Ensembl:ENSMUSG00000098682 AllianceGenome:MGI:3583292
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in retina; retina ganglion cell layer; and retina inner nuclear layer. Orthologous to human OTX2-AS1 (OTX2 antisense RNA 1 (head to head)). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
14 C1; 14 25.36 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (48906745..49030805)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (48669288..48793348)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35766 Neighboring gene STARR-seq mESC enhancer starr_36611 Neighboring gene orthodenticle homeobox 2 Neighboring gene STARR-seq mESC enhancer starr_36613 Neighboring gene STARR-seq mESC enhancer starr_36614 Neighboring gene predicted gene 48909 Neighboring gene predicted gene, 25380 Neighboring gene STARR-seq mESC enhancer starr_36616 Neighboring gene predicted gene, 38660 Neighboring gene STARR-seq mESC enhancer starr_36619 Neighboring gene predicted gene, 22699 Neighboring gene transcription initiation factor TFIID subunit 13-like Neighboring gene predicted gene, 41149

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Other Names

  • Otx2 opposite strand transcript 1
  • orthodenticle homolog 2 opposite strand 1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029384.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK042665
    Related
    ENSMUST00000183803.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    48906745..49030805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)