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TRMT11 tRNA methyltransferase 11 homolog [ Homo sapiens (human) ]

Gene ID: 60487, updated on 17-Jun-2019

Summary

Official Symbol
TRMT11provided by HGNC
Official Full Name
tRNA methyltransferase 11 homologprovided by HGNC
Primary source
HGNC:HGNC:21080
See related
Ensembl:ENSG00000066651
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRM11; MDS024; C6orf75; TRMT11-1
Expression
Ubiquitous expression in endometrium (RPKM 2.2), duodenum (RPKM 1.9) and 25 other tissues See more
Orthologs

Genomic context

See TRMT11 in Genome Data Viewer
Location:
6q22.32
Exon count:
22
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (125986430..126079719)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (126307576..126360422)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene NCOA7-HINT3 intergenic CAGE-defined high expression enhancer Neighboring gene histidine triad nucleotide binding protein 3 Neighboring gene RNA, 5S ribosomal pseudogene 216 Neighboring gene Sharpr-MPRA regulatory region 12057 Neighboring gene uncharacterized LOC101928096 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.
NHGRI GWA Catalog

Pathways from BioSystems

  • Gene Expression, organism-specific biosystem (from REACTOME)
    Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
  • tRNA modification in the nucleus and cytosol, organism-specific biosystem (from REACTOME)
    tRNA modification in the nucleus and cytosol, organism-specific biosystemAt least 92 distinct tRNA nucleotide base modifications have been found. The modifications are made post-transcriptionally by a large group of disparate enzymes located in the nucleus, cytosol, and m...
  • tRNA processing, organism-specific biosystem (from REACTOME)
    tRNA processing, organism-specific biosystemGenes encoding transfer RNAs (tRNAs) are transcribed by RNA polymerase III in the nucleus and by mitochondrial RNA polymerase in the mitochondrion.In the nucleus transcription reactions produce precu...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tRNA (guanine-N2-)-methyltransferase activity EXP
Inferred from Experiment
more info
PubMed 
tRNA (guanine-N2-)-methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tRNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
tRNA methylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
tRNA (guanine(10)-N2)-methyltransferase homolog
Names
tRNA guanosine-2'-O-methyltransferase TRM11 homolog
NP_001026882.2
NP_001337509.1
NP_001337510.1
NP_001337511.1
NP_001337512.1
NP_001337513.1
NP_001337514.1
NP_001337515.1
NP_001337516.1
NP_001337517.1
NP_001337518.1
NP_001337519.1
NP_001337520.1
NP_001337521.1
NP_001337522.1
NP_001337523.1
NP_001337524.1
NP_001337525.1
NP_001337526.1
XP_016866657.1
XP_024302284.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031712.3NP_001026882.2  tRNA (guanine(10)-N2)-methyltransferase homolog isoform a

    See identical proteins and their annotated locations for NP_001026882.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a).
    Source sequence(s)
    AF532977, BC056878
    Consensus CDS
    CCDS35496.1
    UniProtKB/Swiss-Prot
    Q7Z4G4
    Related
    ENSP00000333934.5, ENST00000334379.11
    Conserved Domains (2) summary
    COG1041
    Location:9416
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:190321
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
  2. NM_001350580.1NP_001337509.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform b

    Status: VALIDATED

    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:9404
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  3. NM_001350581.1NP_001337510.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3), as well as variants 4-6, encodes isoform c.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:7353
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  4. NM_001350582.1NP_001337511.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4), as well as variants 3, 5, and 6, encodes isoform c.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:7353
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  5. NM_001350583.1NP_001337512.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5), as well as variants 3, 4, and 6, encodes isoform c.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:7353
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  6. NM_001350584.1NP_001337513.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6), as well as variants 3-5, encodes isoform c.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:7353
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  7. NM_001350585.1NP_001337514.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform d

    Status: VALIDATED

    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:1218
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  8. NM_001350586.1NP_001337515.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8), as well as variants 9-19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  9. NM_001350587.1NP_001337516.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9), as well as variants 8 and 10-19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  10. NM_001350588.1NP_001337517.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10), as well as variants 8, 9, and 11-19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  11. NM_001350589.1NP_001337518.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (11), as well as variants 8-10 and 12-19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  12. NM_001350590.1NP_001337519.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (12), as well as variants 8-11 and 13-19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  13. NM_001350591.1NP_001337520.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (13), as well as variants 8-12 and 14-19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  14. NM_001350592.1NP_001337521.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (14), as well as variants 8-13 and 15-19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  15. NM_001350593.1NP_001337522.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (15), as well as variants 8-14 and 16-19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  16. NM_001350594.1NP_001337523.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (16), as well as variants 8-15 and 17-19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  17. NM_001350595.1NP_001337524.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (17), as well as variants 8-16, 18, and 19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  18. NM_001350596.1NP_001337525.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (18), as well as variants 8-17 and 19, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  19. NM_001350597.1NP_001337526.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (19), as well as variants 8-18, encodes isoform e.
    Source sequence(s)
    AL035689
    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]

RNA

  1. NR_146795.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689
    Related
    ENST00000479748.5
  2. NR_146796.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689
  3. NR_146797.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689, AL391115
  4. NR_146798.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689
  5. NR_146799.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689, AL391115
  6. NR_146800.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689
  7. NR_146801.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689
  8. NR_146802.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689
  9. NR_146803.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689, AL391115
  10. NR_146804.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035689, AL391115

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    125986430..126079719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017011168.1XP_016866657.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform X1

    Conserved Domains (1) summary
    cl28094
    Location:1218
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]
  2. XM_024446516.1XP_024302284.1  tRNA (guanine(10)-N2)-methyltransferase homolog isoform X2

    Conserved Domains (1) summary
    cl28094
    Location:35183
    Trm11; tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]

RNA

  1. XR_002956294.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_021820.1: Suppressed sequence

    Description
    NM_021820.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate; both the transcript and the protein have no support.
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