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Htr1f 5-hydroxytryptamine receptor 1F [ Rattus norvegicus (Norway rat) ]

Gene ID: 60448, updated on 17-Nov-2020

Summary

Official Symbol
Htr1fprovided by RGD
Official Full Name
5-hydroxytryptamine receptor 1Fprovided by RGD
Primary source
RGD:71083
See related
Ensembl:ENSRNOG00000000716
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Htr1eb
Summary
G-protein coupled receptor for serotonin [RGD, Feb 2006]
Orthologs

Genomic context

See Htr1f in Genome Data Viewer
Location:
11p12
Exon count:
1
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (1982113..1983513, complement)
106 current Rn_Celera (GCF_000002265.2) 11 AC_000079.1 (2624797..2626196, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 11 NC_005110.3 (1960208..1961608, complement)

Chromosome 11 - NC_005110.4Genomic Context describing neighboring genes Neighboring gene similar to DNA-directed RNA polymerase II 23 kDa polypeptide (RPB25) (RPB5) (RPABC1) Neighboring gene CGG triplet repeat binding protein 1 Neighboring gene geminin-like Neighboring gene POU class 1 homeobox 1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
G protein-coupled serotonin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
G protein-coupled serotonin receptor activity IEA
Inferred from Electronic Annotation
more info
 
G protein-coupled serotonin receptor activity ISO
Inferred from Sequence Orthology
more info
 
G protein-coupled serotonin receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
neurotransmitter receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
serotonin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
serotonin binding IEA
Inferred from Electronic Annotation
more info
 
serotonin binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
dendrite IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
integral component of plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
5-hydroxytryptamine receptor 1F
Names
5-HT-1F
5-HT1F
5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled
serotonin receptor 1F
serotonin receptor gene (similar to Mm Htr1eb)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021857.3NP_068629.2  5-hydroxytryptamine receptor 1F

    See identical proteins and their annotated locations for NP_068629.2

    Status: VALIDATED

    Source sequence(s)
    AABR07033025
    UniProtKB/TrEMBL
    G3V626
    Related
    ENSRNOP00000000907.3, ENSRNOT00000000907.5
    Conserved Domains (2) summary
    pfam00001
    Location:41347
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:41222
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005110.4 Reference Rnor_6.0 Primary Assembly

    Range
    1982113..1983513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000079.1 Alternate Rn_Celera

    Range
    2624797..2626196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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