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Acrv1 acrosomal vesicle protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 60353, updated on 13-Aug-2019

Summary

Official Symbol
Acrv1provided by RGD
Official Full Name
acrosomal vesicle protein 1provided by RGD
Primary source
RGD:620153
See related
Ensembl:ENSRNOG00000008508
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Sp10
Summary
testis-specific differentiation antigen; associated with the acrosome of mature sperm; human homolog has been targeted for a potential contraceptive vaccine [RGD, Feb 2006]
Expression
Restricted expression toward (RPKM 290.6) See more
Orthologs

Genomic context

See Acrv1 in Genome Data Viewer
Location:
8q21
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (39164991..39170568)
106 current Rn_Celera (GCF_000002265.2) 8 AC_000076.1 (38031165..38036742, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 8 NC_005107.3 (39167849..39173426)

Chromosome 8 - NC_005107.4Genomic Context describing neighboring genes Neighboring gene similar to heat shock protein 1, beta Neighboring gene roundabout guidance receptor 4 Neighboring gene uncharacterized LOC102556325 Neighboring gene checkpoint kinase 1 Neighboring gene STT3 oligosaccharyltransferase complex catalytic subunit A

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
acrosomal vesicle ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
acrosomal protein SP-10
Names
sperm protein 10

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021747.1NP_068515.1  acrosomal protein SP-10 precursor

    See identical proteins and their annotated locations for NP_068515.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ243484
    UniProtKB/TrEMBL
    Q9WUY6
    Related
    ENSRNOP00000011309.1, ENSRNOT00000011309.3
    Conserved Domains (1) summary
    cd00117
    Location:191267
    LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005107.4 Reference Rnor_6.0 Primary Assembly

    Range
    39164991..39170568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000076.1 Alternate Rn_Celera

    Range
    38031165..38036742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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