Format

Send to:

Choose Destination

Nxph3 neurexophilin 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 59315, updated on 12-Jan-2022

Summary

Official Symbol
Nxph3provided by RGD
Official Full Name
neurexophilin 3provided by RGD
Primary source
RGD:620693
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Nph3
Summary
Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region. Orthologous to human NXPH3 (neurexophilin 3). [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in Brain (RPKM 76.9), Uterus (RPKM 21.1) and 8 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Nxph3 in Genome Data Viewer
Location:
10q26
Exon count:
2
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (80456283..80459949, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (83329263..83332929, complement)

Chromosome 10 - NC_051345.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095178 Neighboring gene small nucleolar RNA SNORA4 Neighboring gene speckle type BTB/POZ protein Neighboring gene nerve growth factor receptor Neighboring gene prohibitin 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021679.2NP_067711.2  neurexophilin-3 precursor

    Status: PROVISIONAL

    Source sequence(s)
    JACYVU010000220
    Conserved Domains (1) summary
    pfam06312
    Location:59252
    Neurexophilin

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051345.1 Reference mRatBN7.2 Primary Assembly

    Range
    80456283..80459949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center