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Mest mesoderm specific transcript [ Rattus norvegicus (Norway rat) ]

Gene ID: 58827, updated on 13-Aug-2019

Summary

Official Symbol
Mestprovided by RGD
Official Full Name
mesoderm specific transcriptprovided by RGD
Primary source
RGD:1594589
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 272.4), Muscle (RPKM 177.9) and 9 other tissues See more
Orthologs

Genomic context

See Mest in Genome Data Viewer
Location:
4q22
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (58052786..58063227)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (57811101..57821884)

Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene carboxypeptidase A1 Neighboring gene centrosomal protein 41 Neighboring gene coatomer protein complex, subunit gamma 2 Neighboring gene testis specific, 13

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC73011

Gene Ontology Provided by RGD

Function Evidence Code Pubs
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of lipid storage IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of lipid storage ISO
Inferred from Sequence Orthology
more info
PubMed 
response to retinoic acid ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
PubMed 
endoplasmic reticulum ISS
Inferred from Sequence or Structural Similarity
more info
 
endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
mesoderm-specific transcript homolog protein
Names
mesoderm specific transcript homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009617.1NP_001009617.1  mesoderm-specific transcript homolog protein

    See identical proteins and their annotated locations for NP_001009617.1

    Status: PROVISIONAL

    Source sequence(s)
    BC062800
    UniProtKB/Swiss-Prot
    Q6P5P5
    Conserved Domains (2) summary
    COG0596
    Location:47321
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    cl21494
    Location:70152
    Abhydrolase; alpha/beta hydrolases

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

    Range
    58052786..58063227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000072.1 Alternate Rn_Celera

    Range
    54452983..54463392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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