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oga O-GlcNAcase [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 585537, updated on 14-Dec-2023

Summary

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Symbol
oga
Full Name
O-GlcNAcase
Primary source
EchinoBase:ECB-GENE-23078557
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145600.1 (32671945..32702436, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003576964.1 (375021..396603, complement)

NW_022145600.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115924240 Neighboring gene receptor expression-enhancing protein 2 Neighboring gene glutamine amidotransferase-like class 1 domain-containing protein 3A, mitochondrial Neighboring gene sphingosine-1-phosphate phosphatase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylglucosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-GlcNAcase
Names
bifunctional protein NCOAT-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145600.1 Reference Spur_5.0 Primary Assembly

    Range
    32671945..32702436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030986238.1 → XP_030842098.1  protein O-GlcNAcase isoform X2

    UniProtKB/TrEMBL
    A0A7M7NUW5
    Conserved Domains (1) summary
    pfam07555
    Location:8 → 280
    NAGidase; beta-N-acetylglucosaminidase

  2. XM_030986236.1 → XP_030842096.1  protein O-GlcNAcase isoform X1

    UniProtKB/TrEMBL
    A0A7M7NVM5
    Conserved Domains (1) summary
    pfam07555
    Location:8 → 280
    NAGidase; beta-N-acetylglucosaminidase

  3. XM_030986239.1 → XP_030842099.1  protein O-GlcNAcase isoform X3

    UniProtKB/TrEMBL
    A0A7M7NXR5
    Conserved Domains (1) summary
    pfam07555
    Location:8 → 280
    NAGidase; beta-N-acetylglucosaminidase
Nucleotide Protein
Heading Accession and Version

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