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ABRACL ABRA C-terminal like [ Homo sapiens (human) ]

Gene ID: 58527, updated on 21-Dec-2019

Summary

Official Symbol
ABRACLprovided by HGNC
Official Full Name
ABRA C-terminal likeprovided by HGNC
Primary source
HGNC:HGNC:21230
See related
Ensembl:ENSG00000146386
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Costars; HSPC280; PRO2013; C6orf115
Expression
Broad expression in colon (RPKM 38.5), lymph node (RPKM 36.1) and 23 other tissues See more
Orthologs

Genomic context

See ABRACL in Genome Data Viewer
Location:
6q24.1
Exon count:
4
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (139028745..139043302)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (139349819..139364439)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene epithelial cell transforming 2 like Neighboring gene uncharacterized LOC107986650 Neighboring gene RALBP1 associated Eps domain containing 1 Neighboring gene Sharpr-MPRA regulatory region 4168 Neighboring gene hdc homolog, cell cycle regulator Neighboring gene taxilin beta Neighboring gene uncharacterized LOC102723690

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
regulation of actin filament-based process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
costars family protein ABRACL
Names
ABRA C-terminal-like protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021243.3NP_067066.1  costars family protein ABRACL

    See identical proteins and their annotated locations for NP_067066.1

    Status: VALIDATED

    Source sequence(s)
    AF116682, BG563686
    Consensus CDS
    CCDS43509.1
    UniProtKB/Swiss-Prot
    Q9P1F3
    Related
    ENSP00000356632.3, ENST00000367660.4
    Conserved Domains (1) summary
    pfam14705
    Location:278
    Costars; Costars

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    139028745..139043302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017011151.1XP_016866640.1  costars family protein ABRACL isoform X1

    UniProtKB/Swiss-Prot
    Q9P1F3
    Conserved Domains (1) summary
    pfam14705
    Location:278
    Costars; Costars
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