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LINC00474 long intergenic non-protein coding RNA 474 [ Homo sapiens (human) ]

Gene ID: 58483, updated on 13-May-2022

Summary

Official Symbol
LINC00474provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 474provided by HGNC
Primary source
HGNC:HGNC:23367
See related
Ensembl:ENSG00000204148 AllianceGenome:HGNC:23367
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf27; EST-YD1
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00474 in Genome Data Viewer
Location:
9q33.1
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (115888162..115925207, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (128081187..128118224, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (118650441..118687486, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC101928775 Neighboring gene uncharacterized LOC105376234 Neighboring gene uncharacterized LOC124902258 Neighboring gene uncharacterized LOC105376236

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
EBI GWAS Catalog

General gene information

Markers

Clone Names

  • MGC126098, MGC126099

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024032.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB021923, AL732367, BC104240, BX116645
    Related
    ENST00000374014.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    115888162..115925207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    128081187..128118224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)