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LOC582203 DNA ligase 4 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 582203, updated on 8-Apr-2017
Gene symbol
LOC582203
Gene description
DNA ligase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus
Also known as
lig4
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current Spur_4.2 (GCF_000002235.4) Unplaced Scaffold NW_011967805.1 (1120778..1142107, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577074.1 (1097777..1117692, complement)

NW_011967805.1Genomic Context describing neighboring genes Neighboring gene trace amine-associated receptor 6-like Neighboring gene prohibitin Neighboring gene monocarboxylate transporter 14-like Neighboring gene cholesterol 24-hydroxylase

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
Preferred Names
LOW QUALITY PROTEIN: DNA ligase 4
Names
ligase IV, DNA, ATP-dependent

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_4.2 Primary Assembly

Genomic

  1. NW_011967805.1 Reference Spur_4.2 Primary Assembly

    Range
    1120778..1142107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011669908.1XP_011668210.1  LOW QUALITY PROTEIN: DNA ligase 4

    Conserved Domains (7) summary
    cd07968
    Location:474612
    OBF_DNA_ligase_IV; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit
    cd07903
    Location:249471
    Adenylation_DNA_ligase_IV; Adenylation domain of DNA Ligase IV
    cd00027
    Location:863915
    BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
    TIGR00574
    Location:96618
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    pfam00533
    Location:675746
    BRCT; BRCA1 C Terminus (BRCT) domain
    pfam04675
    Location:30217
    DNA_ligase_A_N; DNA ligase N terminus
    pfam11411
    Location:767799
    DNA_ligase_IV; DNA ligase IV
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