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LOC582056 fibrocystin-L [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 582056, updated on 12-Aug-2022
Gene symbol
LOC582056
Gene description
fibrocystin-L
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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See LOC582056 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
64
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145600.1 (1161993..1246517, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577180.1 (513749..594186)

NW_022145600.1Genomic Context describing neighboring genes Neighboring gene protein FAM160B1 Neighboring gene bridging integrator 3 Neighboring gene uncharacterized LOC115923954 Neighboring gene 5'-nucleotidase, cytosolic II Neighboring gene cilia and flagella associated protein 43

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Preferred Names
fibrocystin-L

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145600.1 Reference Spur_5.0 Primary Assembly

    Range
    1161993..1246517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030986388.1 → XP_030842248.1  fibrocystin-L

    UniProtKB/TrEMBL
    A0A7M7NX46
    Conserved Domains (7) summary
    cd00603
    Location:894 → 975
    IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
    pfam01753
    Location:4455 → 4489
    zf-MYND; MYND finger
    pfam01833
    Location:1665 → 1746
    TIG; IPT/TIG domain
    pfam10162
    Location:1933 → 2051
    G8; G8 domain
    pfam13229
    Location:3098 → 3269
    Beta_helix; Right handed beta helix region
    cl08459
    Location:82 → 162
    PA14; PA14 domain
    cl19115
    Location:1135 → 1217
    Cupredoxin; Cupredoxin superfamily
Nucleotide Protein
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