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celf1 cugbp, Elav-like family member 1 [ Danio rerio (zebrafish) ]

Gene ID: 58137, updated on 22-Nov-2020

Summary

Official Symbol
celf1provided by ZNC
Official Full Name
cugbp, Elav-like family member 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-000501-1
See related
Ensembl:ENSDARG00000005315
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
br; brul; Bruno; cb920; cugbp; CELF-1; cugbp1
Orthologs

Genomic context

See celf1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
18
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (38535934..38570951, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (38264676..38299692, complement)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (39928130..39963054, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 9 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 19 Neighboring gene protein tyrosine phosphatase mitochondrial 1 Neighboring gene NADH:ubiquinone oxidoreductase core subunit S3

Genomic regions, transcripts, and products

Bibliography

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA 3'-UTR binding IPI
Inferred from Physical Interaction
more info
PubMed 
mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
mRNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
determination of left/right symmetry IMP
Inferred from Mutant Phenotype
more info
PubMed 
developmental cell growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
digestive tract development IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic liver development IMP
Inferred from Mutant Phenotype
more info
PubMed 
endodermal digestive tract morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
lens fiber cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
liver development IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splice site selection IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
pancreas development IMP
Inferred from Mutant Phenotype
more info
PubMed 
pancreas morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of mRNA catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
pole plasm IDA
Inferred from Direct Assay
more info
PubMed 
ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CUGBP Elav-like family member 1
Names
CUG triplet repeat, RNA-binding protein 1
CUG-BP- and ETR-3-like factor 1
EDEN-BP/Bruno-like protein
RNA-binding protein BRUNOL-2
bruno-like protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328413.1NP_001315342.1  CUGBP Elav-like family member 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    BX571680, CR318601, CT636421
    UniProtKB/Swiss-Prot
    Q9IBD0
    Related
    ENSDARP00000041054.7, ENSDART00000041055.9
    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145224
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:442533
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56529
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  2. NM_131613.2NP_571688.1  CUGBP Elav-like family member 1 isoform 1

    See identical proteins and their annotated locations for NP_571688.1

    Status: VALIDATED

    Source sequence(s)
    BX571680, CR318601, CT636421, EH541949
    UniProtKB/Swiss-Prot
    Q9IBD0
    Related
    ENSDARP00000115192.1, ENSDART00000134570.4
    Conserved Domains (4) summary
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107187
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:409500
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:18496
    ELAV_HUD_SF; ELAV/HuD family splicing factor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    38535934..38570951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009303337.3XP_009301612.1  CUGBP Elav-like family member 1 isoform X18

    Conserved Domains (4) summary
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107186
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:415506
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:18502
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  2. XM_009303329.3XP_009301604.1  CUGBP Elav-like family member 1 isoform X2

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145224
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:453544
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56540
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  3. XM_005168999.4XP_005169056.1  CUGBP Elav-like family member 1 isoform X14

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:426517
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56513
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  4. XM_009303335.3XP_009301610.1  CUGBP Elav-like family member 1 isoform X10

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:434525
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56521
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  5. XM_009303332.3XP_009301607.1  CUGBP Elav-like family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A0H2UKD3
    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:450541
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56537
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  6. XM_005168997.4XP_005169054.1  CUGBP Elav-like family member 1 isoform X12

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:430521
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56517
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  7. XM_009303334.3XP_009301609.1  CUGBP Elav-like family member 1 isoform X9

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:437528
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56524
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  8. XM_005168996.4XP_005169053.1  CUGBP Elav-like family member 1 isoform X11

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:431522
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56518
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  9. XM_009303333.3XP_009301608.1  CUGBP Elav-like family member 1 isoform X8

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:438529
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56525
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  10. XM_009303331.3XP_009301606.1  CUGBP Elav-like family member 1 isoform X3

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:453544
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56540
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  11. XM_009303328.3XP_009301603.1  CUGBP Elav-like family member 1 isoform X1

    See identical proteins and their annotated locations for XP_009301603.1

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:454545
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56541
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  12. XM_009303327.3XP_009301602.1  CUGBP Elav-like family member 1 isoform X1

    See identical proteins and their annotated locations for XP_009301602.1

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:454545
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56541
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  13. XM_009303338.2XP_009301613.1  CUGBP Elav-like family member 1 isoform X19

    Conserved Domains (4) summary
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107187
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:412503
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:18499
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  14. XM_009303336.2XP_009301611.1  CUGBP Elav-like family member 1 isoform X17

    Conserved Domains (4) summary
    cd12631
    Location:1598
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107187
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:416507
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:18503
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  15. XM_005168998.3XP_005169055.1  CUGBP Elav-like family member 1 isoform X13

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:427518
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56514
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  16. XM_005168994.3XP_005169051.1  CUGBP Elav-like family member 1 isoform X6

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:443534
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56530
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  17. XM_005168991.3XP_005169048.1  CUGBP Elav-like family member 1 isoform X5

    Conserved Domains (4) summary
    cd12631
    Location:53136
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:145225
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:447538
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    TIGR01661
    Location:56534
    ELAV_HUD_SF; ELAV/HuD family splicing factor
  18. XM_021477598.1XP_021333273.1  CUGBP Elav-like family member 1 isoform X16

    Conserved Domains (3) summary
    cd12631
    Location:42125
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:134214
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:419510
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  19. XM_021477595.1XP_021333270.1  CUGBP Elav-like family member 1 isoform X7

    Conserved Domains (3) summary
    cd12631
    Location:42125
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:134214
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:443534
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
  20. XM_021477597.1XP_021333272.1  CUGBP Elav-like family member 1 isoform X15

    Conserved Domains (3) summary
    cd12631
    Location:42125
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:134214
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:420511
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
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