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actc1b actin alpha cardiac muscle 1b [ Danio rerio (zebrafish) ]

Gene ID: 58114, updated on 19-Sep-2021

Summary

Official Symbol
actc1bprovided by ZNC
Official Full Name
actin alpha cardiac muscle 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-000322-1
See related
Ensembl:ENSDARG00000099197
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
act; acta1; fa27h01; fb83f06; wu:fa27h01; wu:fb83f06
Orthologs
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Genomic context

See actc1b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (117110..124665, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (117120..124675, complement)
103 previous assembly Zv9 (GCF_000002035.4) 17 NC_007128.5 (758921..766476, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene gremlin 1b Neighboring gene Rho GTPase activating protein 11A Neighboring gene ryanodine receptor 3-like Neighboring gene kelch domain containing 2 Neighboring gene leucine rich repeat protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
part_of dynactin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
actin, alpha cardiac muscle 1b
Names
actin, alpha 1, skeletal muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131591.1NP_571666.1  actin, alpha cardiac muscle 1b

    See identical proteins and their annotated locations for NP_571666.1

    Status: PROVISIONAL

    Source sequence(s)
    AF180887
    UniProtKB/TrEMBL
    Q9I8V1
    Related
    ENSDARP00000130083.1, ENSDART00000158825.3
    Conserved Domains (1) summary
    PTZ00281
    Location:4377
    PTZ00281; actin; Provisional

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    117110..124665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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