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rplp0 ribosomal protein, large, P0 [ Danio rerio (zebrafish) ]

Gene ID: 58101, updated on 5-Sep-2020

Summary

Official Symbol
rplp0provided by ZNC
Official Full Name
ribosomal protein, large, P0provided by ZNC
Primary source
ZFIN:ZDB-GENE-000629-1
See related
Ensembl:ENSDARG00000051783
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
a; arp; fa56b12; fb04a12; wu:fb04a1; wu:fb15a0; wu:fa56b12; wu:fb15a08; wu:fk48c12
Orthologs

Genomic context

See rplp0 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (1950658..1963486, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (1685333..1698161, complement)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (2059986..2072870, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110439839 Neighboring gene si:ch73-55i23.1 Neighboring gene phospholipase A2, group IVC (cytosolic, calcium-independent), like 1 Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 33 Neighboring gene nuclear protein 1a

Genomic regions, transcripts, and products

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
large ribosomal subunit rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
chordate embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosomal large subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
60S acidic ribosomal protein P0
Names
60S ribosomal protein L10E
acidic ribosomal phophoprotein
arbp

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131580.2NP_571655.2  60S acidic ribosomal protein P0

    See identical proteins and their annotated locations for NP_571655.2

    Status: PROVISIONAL

    Source sequence(s)
    BC062854
    UniProtKB/TrEMBL
    Q6P5K3
    Related
    ENSDARP00000067953.3, ENSDART00000073462.5
    Conserved Domains (3) summary
    cd05795
    Location:9182
    Ribosomal_P0_L10e; Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk ...
    PTZ00135
    Location:1272
    PTZ00135; 60S acidic ribosomal protein P0; Provisional
    pfam00428
    Location:232273
    Ribosomal_60s; 60s Acidic ribosomal protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    1950658..1963486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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