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arntl2 aryl hydrocarbon receptor nuclear translocator-like 2 [ Danio rerio (zebrafish) ]

Gene ID: 58099, updated on 3-Oct-2019

Summary

Official Symbol
arntl2provided by ZNC
Official Full Name
aryl hydrocarbon receptor nuclear translocator-like 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-000509-2
See related
Ensembl:ENSDARG00000041381
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
bmal2; wu:fj90c09
Orthologs

Genomic context

See arntl2 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
18
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (15570910..15610484, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (15598251..15642213, complement)
103 previous assembly Zv9 (GCF_000002035.4) 18 NC_007129.5 (15247629..15289878, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene PPFIA binding protein 1b Neighboring gene si:ch211-245j22.3 Neighboring gene solute carrier family 17 member 8 Neighboring gene nuclear receptor subfamily 1, group H, member 4

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Clone Names

  • MGC158186

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
circadian rhythm IGI
Inferred from Genetic Interaction
more info
PubMed 
photoperiodism IEP
Inferred from Expression Pattern
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
response to light stimulus IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
transcription factor complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
aryl hydrocarbon receptor nuclear translocator-like protein 2
Names
bmal2a
brain and muscle ARNT-like 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131578.2NP_571653.2  aryl hydrocarbon receptor nuclear translocator-like protein 2

    Status: VALIDATED

    Source sequence(s)
    BX928740
    Related
    ENSDARP00000134619.1, ENSDART00000099849.6
    Conserved Domains (3) summary
    cd00130
    Location:172266
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:91143
    HLH; Helix-loop-helix DNA-binding domain
    cl25986
    Location:353456
    PAS_3; PAS fold

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    15570910..15610484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002456012.1 RNA Sequence

    Related
    ENSDART00000127614.4

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395015.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    412000..451574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395336.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    112827..152401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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