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LOC580315 casein kinase II subunit alpha [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 580315, updated on 14-Dec-2023

Summary

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Gene symbol
LOC580315
Gene description
casein kinase II subunit alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145614.1 (24274453..24304477)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577876.1 (217477..246803, complement)

NW_022145614.1Genomic Context describing neighboring genes Neighboring gene cilia- and flagella-associated protein 20-like Neighboring gene cilia- and flagella-associated protein 20 Neighboring gene coiled-coil domain containing 113 Neighboring gene small nuclear ribonucleoprotein D1 polypeptide

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of protein kinase CK2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
casein kinase II subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145614.1 Reference Spur_5.0 Primary Assembly

    Range
    24274453..24304477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_780382.5 → XP_785475.4  casein kinase II subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A7M7RBF9
    Conserved Domains (1) summary
    cd14132
    Location:18 → 323
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2

  2. XM_003728535.3 → XP_003728583.1  casein kinase II subunit alpha isoform X2

    See identical proteins and their annotated locations for XP_003728583.1

    UniProtKB/TrEMBL
    A0A7M7GIL1
    Conserved Domains (1) summary
    cd14132
    Location:18 → 323
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2

RNA

  1. XR_970459.2 RNA Sequence

Nucleotide Protein
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